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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psest_1936 and Psest_1937 are separated by 14 nucleotides
Psest_1937 and Psest_1938 are separated by 172 nucleotides
Psest_1938 and Psest_1939 overlap by 4 nucleotides
Psest_1939 and Psest_1940 overlap by 4 nucleotides
Psest_1936: Psest_1936 - Response regulator with putative antiterminator output domain, at 2,048,334 to 2,048,912
_1936
Psest_1937: Psest_1937 - ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components, at 2,048,927 to 2,050,147
_1937
Psest_1938: Psest_1938 - hypothetical protein, at 2,050,320 to 2,051,948
_1938
Psest_1939: Psest_1939 - Tetratricopeptide repeat., at 2,051,945 to 2,053,666
_1939
Psest_1940: Psest_1940 - Uncharacterized protein containing a von Willebrand factor type A (vWA) domain, at 2,053,663 to 2,054,682
_1940
Group
Condition
Psest
_1936
Psest
_1937
Psest
_1938
Psest
_1939
Psest
_1940
stress
Def Benzalkonium Chloride 0.002 mg/ml
-0.2
-0.5
-1.9
-2.3
-2.3
stress
Bacitracin 0.25 mg/ml
-0.1
-0.3
-1.0
-1.4
-2.1
stress
Bacitracin 0.25 mg/ml
+0.0
-0.1
-1.2
-1.5
-1.4
stress
Def Cephalothin 0.08 mg/ml
+0.1
+0.0
-1.7
-1.1
-1.2
stress
Benzethonium chloride 0.0125 mM
+0.1
+0.2
-1.5
-0.8
-1.7
stress
Choline chloride 90 mM
+0.2
-0.1
-0.6
-1.1
-1.9
stress
nitrate 250 mM
+0.0
+0.0
-1.2
-1.2
-1.0
nitrogen source
nitrite (N)
-2.5
-0.6
+0.2
-0.3
-0.2
stress
nitrate 200 mM
+0.0
-0.9
-0.7
-0.7
-1.0
stress
Benzethonium chloride 0.0125 mM
+0.0
+0.0
-0.8
-1.3
-1.1
carbon source
L-Proline (C)
-0.0
-0.0
-0.8
-1.1
-1.2
stress
Def Benzethonium chloride 0.008 mM
-0.1
-0.1
-1.1
-1.0
-0.9
stress
Carbenicillin 0.008 mg/ml
-0.3
-0.2
-0.6
-0.8
-1.1
stress
Nalidixic 0.00390625 mg/ml
-0.1
-0.4
+0.2
-0.2
-2.4
stress
Choline chloride 90 mM
+0.1
+0.4
-0.9
-1.4
-1.0
stress
Cisplatin 0.003 mg/ml
-0.4
-0.3
-0.6
-0.5
-0.9
stress
Doxycycline hyclate 0.0002 mg/ml
+0.3
-0.3
-1.0
-0.9
-0.7
nitrogen source
nitrate (N)
-2.0
-1.2
-0.2
+0.0
+0.7
stress
Cephalothin 0.04 mg/ml
+0.5
-0.0
-1.3
-1.3
-0.5
nitrogen source
nitrate (N)
-2.4
-0.9
+0.1
+0.2
+0.5
stress
Phosphomycin 0.012 mg/ml
+0.2
-0.1
-0.6
-0.9
-1.0
nitrogen source
nitrate (N)
-1.9
-0.8
+0.1
+0.1
+0.1
stress
Def Tetracycline 0.0004 mg/ml
+0.2
+0.2
-0.3
-0.6
-1.9
carbon source
L-tyrosine (C)
-0.4
+0.1
-0.3
+0.2
-1.9
nitrogen source
nitrite (N)
-1.8
-0.4
+0.3
-0.0
+0.3
nitrogen source
L-Glutamic (N)
-0.3
+0.5
+0.6
+0.7
+0.6
carbon source
L-Lactate (C)
-0.2
-0.0
+0.9
+0.6
+1.1
stress
Chlorate 75 mM
+0.5
+0.2
+1.5
+1.3
+0.3
stress
L-Lysine 200 mM
-0.4
-0.1
+1.8
+1.6
+2.0
stress
L-Lysine 200 mM
-0.2
+0.2
+1.4
+1.3
+2.1
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