Fitness for 5 genes in Pseudomonas stutzeri RCH2

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500 ntPsest_1919 and Psest_1920 are separated by 68 nucleotidesPsest_1920 and Psest_1921 overlap by 1 nucleotidesPsest_1921 and Psest_1922 are separated by 276 nucleotidesPsest_1922 and Psest_1923 are separated by 315 nucleotides Psest_1919: Psest_1919 - Uncharacterized membrane protein (homolog of Drosophila rhomboid), at 2,026,504 to 2,027,364 _1919 Psest_1920: Psest_1920 - Uncharacterized protein conserved in bacteria, at 2,027,433 to 2,027,711 _1920 Psest_1921: Psest_1921 - Protein of unknown function (DUF2797)., at 2,027,711 to 2,028,544 _1921 Psest_1922: Psest_1922 - aminopeptidase N, Escherichia coli type, at 2,028,821 to 2,031,481 _1922 Psest_1923: Psest_1923 - adhesin-associated BNR repeat protein (from data), at 2,031,797 to 2,032,888 _1923
Group Condition Psest_1919 Psest_1920 Psest_1921 Psest_1922 Psest_1923
stress Doxycycline hyclate 0.0002 mg/ml -0.7 -0.8 +0.2 -4.5 -0.9
stress Spectinomycin 0.00625 mg/ml -0.8 -1.4 -0.5 -4.0 +0.2
stress Spectinomycin 0.00625 mg/ml -0.6 -0.6 +0.1 -4.1 -1.0
stress Benzethonium chloride 0.0125 mM +0.2 -0.9 -0.7 -4.3 -0.1
stress Benzethonium chloride 0.0125 mM -0.3 -0.9 -0.6 -3.6 -0.2
stress Nalidixic 0.00390625 mg/ml -1.2 -3.2 +0.1 -0.9 -0.2
stress Benzethonium chloride 0.01 mM -0.8 -0.5 -0.4 -3.2 -0.4
stress Furfuryl Alcohol 0.05 vol% +0.7 -0.8 -1.4 -0.3 -2.8
stress Def Benzalkonium Chloride 0.002 mg/ml -0.5 +0.6 -1.0 -2.3 -1.3
carbon source succinate (C) -0.8 -3.8 -0.1 -0.1 +0.7
stress Carbenicillin 0.008 mg/ml -1.3 -1.8 +0.5 -0.4 -0.9
RCH2 grown on a colony of Serratia +0.6 -3.4 -0.0 +0.1 -1.2
stress Def 2-Furfuraldehyde 0.032 vol% -1.5 -1.7 -0.8 -1.2 +1.5
stress Vanillin 2 mM +0.6 -3.7 +0.4 -0.4 -0.2
stress Gentamicin 0.0016 mg/ml -3.5 +1.1 -1.1 -0.1 +1.0
RCH2 grown on a colony of Serratia +1.6 -1.6 -1.0 +0.3 -0.5
carbon source L-tyrosine (C) -0.8 -1.6 -0.3 -0.7 +2.5
carbon source L-Glutamine (C) -0.0 -2.4 +0.2 +0.0 +2.2
nitrogen source nitrite (N) -0.8 -2.0 +0.4 -0.6 +3.1
carbon source Ethanol (C) +0.1 -0.4 +0.2 -1.9 +2.4
nitrogen source nitrite (N) +0.1 -1.5 -1.3 -0.7 +3.7
nitrogen source L-Valine (N) +0.1 -2.2 -0.1 -0.2 +3.1
nitrogen source L-Glutamic (N) +0.3 -2.3 +0.8 +0.1 +2.2
temperature LB 30C timecourse1 timepoint 3 +0.7 +0.1 -0.2 -2.1 +2.7
RCH2 grown on a colony of N2F3 +0.2 +3.5 -1.0 +0.0 -1.1
temperature LB 30C timecourse2 timepoint 2 +0.7 -0.9 +0.3 -0.8 +2.7
stress nitrate 250 mM -0.7 +1.0 -0.7 +1.3 +1.1
stress Def Carbenicillin 0.008 mg/ml -1.1 -0.2 -0.3 +0.1 +4.0
nitrogen source L-Isoleucine (N) -0.8 +0.1 -0.1 -0.1 +3.7
carbon source butyrate (C) +0.7 +1.6 -0.0 -0.4 +4.8
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