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Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_1919 and Psest_1920 are separated by 68 nucleotides
Psest_1920 and Psest_1921 overlap by 1 nucleotides
Psest_1921 and Psest_1922 are separated by 276 nucleotides
Psest_1922 and Psest_1923 are separated by 315 nucleotides
Psest_1919: Psest_1919 - Uncharacterized membrane protein (homolog of Drosophila rhomboid), at 2,026,504 to 2,027,364
_1919
Psest_1920: Psest_1920 - Uncharacterized protein conserved in bacteria, at 2,027,433 to 2,027,711
_1920
Psest_1921: Psest_1921 - Protein of unknown function (DUF2797)., at 2,027,711 to 2,028,544
_1921
Psest_1922: Psest_1922 - aminopeptidase N, Escherichia coli type, at 2,028,821 to 2,031,481
_1922
Psest_1923: Psest_1923 - adhesin-associated BNR repeat protein
(from data)
, at 2,031,797 to 2,032,888
_1923
Group
Condition
Psest
_1919
Psest
_1920
Psest
_1921
Psest
_1922
Psest
_1923
stress
Doxycycline hyclate 0.0002 mg/ml
-0.7
-0.8
+0.2
-4.5
-0.9
stress
Spectinomycin 0.00625 mg/ml
-0.8
-1.4
-0.5
-4.0
+0.2
stress
Spectinomycin 0.00625 mg/ml
-0.6
-0.6
+0.1
-4.1
-1.0
stress
Benzethonium chloride 0.0125 mM
+0.2
-0.9
-0.7
-4.3
-0.1
stress
Benzethonium chloride 0.0125 mM
-0.3
-0.9
-0.6
-3.6
-0.2
stress
Nalidixic 0.00390625 mg/ml
-1.2
-3.2
+0.1
-0.9
-0.2
stress
Benzethonium chloride 0.01 mM
-0.8
-0.5
-0.4
-3.2
-0.4
stress
Furfuryl Alcohol 0.05 vol%
+0.7
-0.8
-1.4
-0.3
-2.8
stress
Def Benzalkonium Chloride 0.002 mg/ml
-0.5
+0.6
-1.0
-2.3
-1.3
carbon source
succinate (C)
-0.8
-3.8
-0.1
-0.1
+0.7
stress
Carbenicillin 0.008 mg/ml
-1.3
-1.8
+0.5
-0.4
-0.9
RCH2 grown on a colony of Serratia
+0.6
-3.4
-0.0
+0.1
-1.2
stress
Def 2-Furfuraldehyde 0.032 vol%
-1.5
-1.7
-0.8
-1.2
+1.5
stress
Vanillin 2 mM
+0.6
-3.7
+0.4
-0.4
-0.2
stress
Gentamicin 0.0016 mg/ml
-3.5
+1.1
-1.1
-0.1
+1.0
RCH2 grown on a colony of Serratia
+1.6
-1.6
-1.0
+0.3
-0.5
carbon source
L-tyrosine (C)
-0.8
-1.6
-0.3
-0.7
+2.5
carbon source
L-Glutamine (C)
-0.0
-2.4
+0.2
+0.0
+2.2
nitrogen source
nitrite (N)
-0.8
-2.0
+0.4
-0.6
+3.1
carbon source
Ethanol (C)
+0.1
-0.4
+0.2
-1.9
+2.4
nitrogen source
nitrite (N)
+0.1
-1.5
-1.3
-0.7
+3.7
nitrogen source
L-Valine (N)
+0.1
-2.2
-0.1
-0.2
+3.1
nitrogen source
L-Glutamic (N)
+0.3
-2.3
+0.8
+0.1
+2.2
temperature
LB 30C timecourse1 timepoint 3
+0.7
+0.1
-0.2
-2.1
+2.7
RCH2 grown on a colony of N2F3
+0.2
+3.5
-1.0
+0.0
-1.1
temperature
LB 30C timecourse2 timepoint 2
+0.7
-0.9
+0.3
-0.8
+2.7
stress
nitrate 250 mM
-0.7
+1.0
-0.7
+1.3
+1.1
stress
Def Carbenicillin 0.008 mg/ml
-1.1
-0.2
-0.3
+0.1
+4.0
nitrogen source
L-Isoleucine (N)
-0.8
+0.1
-0.1
-0.1
+3.7
carbon source
butyrate (C)
+0.7
+1.6
-0.0
-0.4
+4.8
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