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Protein
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Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_1903 and Psest_1904 are separated by 74 nucleotides
Psest_1904 and Psest_1905 are separated by 116 nucleotides
Psest_1905 and Psest_1907 are separated by 284 nucleotides
Psest_1907 and Psest_1908 are separated by 3 nucleotides
Psest_1903: Psest_1903 - chorismate synthase, at 2,013,534 to 2,014,625
_1903
Psest_1904: Psest_1904 - Arabinose efflux permease, at 2,014,700 to 2,015,851
_1904
Psest_1905: Psest_1905 - Uncharacterized conserved protein, contains double-stranded beta-helix domain, at 2,015,968 to 2,016,513
_1905
Psest_1907: Psest_1907 - hypothetical protein, at 2,016,798 to 2,017,007
_1907
Psest_1908: Psest_1908 - hypothetical protein, at 2,017,011 to 2,017,205
_1908
Group
Condition
Psest
_1903
Psest
_1904
Psest
_1905
Psest
_1907
Psest
_1908
stress
Cephalothin 0.04 mg/ml
N.D.
-0.4
-1.3
-2.1
N.D.
stress
nitrite 2.5 mM
N.D.
-0.2
-1.1
-1.6
N.D.
stress
L-Lysine 200 mM
N.D.
-0.5
-0.7
-1.7
N.D.
stress
Def Cephalothin 0.08 mg/ml
N.D.
-0.1
-0.1
-2.4
N.D.
stress
nitrite 2.5 mM
N.D.
-0.3
-1.2
-1.0
N.D.
temperature
LB 30C timecourse2 timepoint 2
N.D.
-0.2
-0.1
-2.3
N.D.
RCH2 grown on a colony of N2F3
N.D.
-0.7
-1.0
-0.7
N.D.
stress
Def Benzethonium chloride 0.008 mM
N.D.
-0.7
-0.5
-1.2
N.D.
stress
Benzalkonium Chloride 0.002 mg/ml
N.D.
-1.1
-1.1
-0.2
N.D.
anaerobic
nitrate reduction - anaerobic
N.D.
-0.0
-1.4
-0.9
N.D.
stress
Vancomycin 0.016 mg/ml
N.D.
-0.1
-0.6
-1.5
N.D.
stress
D-Cycloserine 0.032 mg/ml
N.D.
-0.4
-1.7
-0.1
N.D.
stress
Thallium(I) acetate 0.08 mg/ml
N.D.
+0.1
-1.2
-0.9
N.D.
stress
Gentamicin 0.0016 mg/ml
N.D.
+0.1
-2.5
+0.4
N.D.
stress
1-ethyl-3-methylimidazolium acetate 40 mM
N.D.
+0.1
-1.6
-0.5
N.D.
nitrogen source
L-Isoleucine (N)
N.D.
-1.0
+0.5
-1.4
N.D.
stress
Bacitracin 0.25 mg/ml
N.D.
-0.3
-1.7
+0.2
N.D.
stress
benzoic 0.4 mg/ml
N.D.
-0.4
-1.8
+0.3
N.D.
RCH2 grown on a colony of Serratia
N.D.
+0.1
-2.1
+0.3
N.D.
stress
nitrate 200 mM
N.D.
+1.0
-1.4
-1.2
N.D.
stress
Cisplatin 0.0016 mg/ml
N.D.
+0.3
-0.9
-0.9
N.D.
stress
Cisplatin 0.003 mg/ml
N.D.
+0.6
-0.6
-1.3
N.D.
stress
A22 0.002 mg/ml
N.D.
-0.0
-1.0
+1.1
N.D.
lb
LB
N.D.
-0.4
-0.7
+1.3
N.D.
lb
LB
N.D.
+0.5
-1.0
+0.7
N.D.
stress
Chloride 200 mM
N.D.
+1.2
-0.9
+0.2
N.D.
stress
Lactate-nitrate; anaerobic sample2
N.D.
-0.4
-0.3
+1.5
N.D.
stress
Lactate-nitrate; anaerobic; cadmium stress sample1
N.D.
-0.6
+0.5
+1.4
N.D.
stress
Def Carbenicillin 0.02 mg/ml
N.D.
+1.3
+0.8
-0.1
N.D.
stress
Def Neomycin 0.0008 mg/ml
N.D.
+0.8
+0.0
+1.4
N.D.
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