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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_1890 and Psest_1891 are separated by 19 nucleotides
Psest_1891 and Psest_1892 are separated by 174 nucleotides
Psest_1892 and Psest_1893 overlap by 4 nucleotides
Psest_1893 and Psest_1894 are separated by 56 nucleotides
Psest_1890: Psest_1890 - Uncharacterized conserved protein, at 1,998,974 to 1,999,795
_1890
Psest_1891: Psest_1891 - segregation and condensation protein B, at 1,999,815 to 2,000,585
_1891
Psest_1892: Psest_1892 - 6-phosphogluconate dehydratase, at 2,000,760 to 2,002,589
_1892
Psest_1893: Psest_1893 - glucokinase, proteobacterial type, at 2,002,586 to 2,003,548
_1893
Psest_1894: Psest_1894 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 2,003,605 to 2,004,339
_1894
Group
Condition
Psest
_1890
Psest
_1891
Psest
_1892
Psest
_1893
Psest
_1894
stress
Def Chlorate 40 mM
-0.4
N.D.
-0.7
-0.5
N.D.
stress
Def 2-Furfuraldehyde 0.032 vol%
-1.0
N.D.
+0.0
-0.4
N.D.
stress
sodium fluoride 6.25 mM
+0.0
N.D.
-0.5
-0.9
N.D.
stress
Benzalkonium Chloride 0.002 mg/ml
-0.1
N.D.
-0.5
-0.7
N.D.
stress
nitrate 250 mM
+0.2
N.D.
-0.1
-1.2
N.D.
stress
Def Chloride 400 mM
+0.2
N.D.
-0.5
-0.6
N.D.
stress
Benzethonium chloride 0.0125 mM
-0.4
N.D.
-0.6
+0.5
N.D.
carbon source
L-tyrosine (C)
+0.2
N.D.
+0.1
-0.8
N.D.
stress
nitrite 2.5 mM
+0.6
N.D.
+0.1
-0.6
N.D.
stress
syringaldehyde 4 mM
+0.2
N.D.
+0.5
-0.5
N.D.
nutrient
Min media with glucose
+0.7
N.D.
-0.6
+0.3
N.D.
RCH2 grown on a colony of ecoli
+0.1
N.D.
+0.7
-0.4
N.D.
stress
Choline chloride 90 mM
-0.4
N.D.
-0.1
+0.9
N.D.
stress
D-Cycloserine 0.032 mg/ml
+1.0
N.D.
+0.0
-0.5
N.D.
stress
syringaldehyde 4 mM
+0.5
N.D.
-0.2
+0.4
N.D.
temperature
Glucose defined 30C timecourse1 timepoint 3
+0.5
N.D.
-0.4
+0.7
N.D.
stress
Nickel (II) chloride 0.8 mM
+0.7
N.D.
+0.5
-0.3
N.D.
stress
Furfuryl Alcohol 0.05 vol%
+0.5
N.D.
-0.2
+0.6
N.D.
stress
syringaldehyde 3 mM
+0.5
N.D.
-0.2
+0.6
N.D.
stress
Choline Lysine 20 mM
+0.7
N.D.
-0.2
+0.5
N.D.
stress
Carbenicillin 0.008 mg/ml
+0.9
N.D.
-0.3
+0.5
N.D.
stress
Lactate-nitrate; anaerobic; copper stress sample2
+0.3
N.D.
+0.3
+0.6
N.D.
RCH2 grown on a colony of ecoli
+0.7
N.D.
+0.5
+0.1
N.D.
temperature
LB 30C timecourse1 timepoint 3
+0.1
N.D.
+0.2
+1.0
N.D.
stress
Choline Lysine 20 mM
+0.8
N.D.
+0.2
+0.3
N.D.
stress
Carbenicillin 0.008 mg/ml
+1.1
N.D.
+0.2
+0.1
N.D.
nitrogen source
nitrite (N)
+0.4
N.D.
+0.4
+0.6
N.D.
stress
Chlorate 75 mM
+0.8
N.D.
+0.3
+0.4
N.D.
temperature
LB 30C timecourse1 timepoint 2
+0.5
N.D.
+0.1
+0.9
N.D.
temperature
LB 30C timecourse2 timepoint 2
+0.3
N.D.
+0.3
+0.8
N.D.
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