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Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_1882 and Psest_1883 are separated by 91 nucleotides
Psest_1883 and Psest_1884 are separated by 142 nucleotides
Psest_1884 and Psest_1885 are separated by 14 nucleotides
Psest_1885 and Psest_1886 are separated by 75 nucleotides
Psest_1882: Psest_1882 - Signal transduction histidine kinase, at 1,992,338 to 1,993,684
_1882
Psest_1883: Psest_1883 - P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein, at 1,993,776 to 1,994,189
_1883
Psest_1884: Psest_1884 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 1,994,332 to 1,995,009
_1884
Psest_1885: Psest_1885 - hypothetical protein, at 1,995,024 to 1,995,401
_1885
Psest_1886: Psest_1886 - Uncharacterized protein conserved in bacteria, at 1,995,477 to 1,995,776
_1886
Group
Condition
Psest
_1882
Psest
_1883
Psest
_1884
Psest
_1885
Psest
_1886
stress
Polymyxin B sulfate 0.0001 mg/ml
-1.1
N.D.
-1.1
-1.5
-0.8
stress
Benzalkonium Chloride 0.002 mg/ml
-0.4
N.D.
-2.6
-0.6
-0.8
stress
Aluminum chloride 0.3 mM
-0.8
N.D.
-2.3
-0.6
-0.5
stress
nitrite 2.5 mM
-0.8
N.D.
-1.8
-0.8
-0.7
stress
Neomycin 0.004 mg/ml
-1.5
N.D.
-2.3
-0.2
+0.2
stress
Bacitracin 0.25 mg/ml
-0.5
N.D.
-2.3
-1.0
+0.3
stress
nitrate 250 mM
-1.2
N.D.
-1.8
+0.2
-0.2
stress
Neomycin 0.004 mg/ml
-1.7
N.D.
-0.9
-0.4
-0.1
stress
nitrite 2.5 mM
-0.2
N.D.
-1.3
-0.8
-0.5
stress
Nalidixic 0.00390625 mg/ml
+0.7
N.D.
-1.3
-1.5
-0.7
RCH2 grown on a colony of 8R2A
-1.2
N.D.
-1.6
+0.3
-0.1
nutrient
L-Histidine
-0.2
N.D.
-1.5
-0.3
-0.6
stress
Def Cephalothin 0.04 mg/ml
+0.2
N.D.
-1.7
-0.5
-0.7
vitamin
With vitamins t1
+0.1
N.D.
-1.7
-0.3
-0.6
stress
Cobalt chloride 0.07 mM
-0.7
N.D.
-1.2
-0.2
-0.4
stress
sodium fluoride 6.25 mM
-0.2
N.D.
-1.2
-1.1
-0.1
stress
Def Cisplatin 0.0002 mg/ml
-0.6
N.D.
-0.7
-0.4
-0.8
stress
Bacitracin 0.25 mg/ml
-0.3
N.D.
-1.4
-0.8
+0.0
stress
Paraquat dichloride 0.015 mg/ml
-0.6
N.D.
-2.3
+0.4
+0.3
stress
Thallium(I) acetate 0.1 mg/ml
+0.2
N.D.
-2.9
+0.8
-0.2
stress
methylglyoxal 0.0016 vol%
-0.1
N.D.
-2.1
+0.6
-0.3
stress
sodium fluoride 8.5 mM
-0.4
N.D.
-1.4
-0.4
+0.5
stress
Lactate-nitrate; anaerobic; cobalt stress sample1
+0.4
N.D.
-1.7
+0.1
-0.4
stress
Lactate-nitrate; anaerobic; uranyl acetate stress sample3
+0.4
N.D.
-1.6
+0.3
-0.3
RCH2 grown on a colony of Pseudomonas migulae strain N1B4
+0.1
N.D.
-1.7
+0.5
+0.5
RCH2 grown on a colony of N2F3
+0.9
N.D.
-1.3
+0.1
+0.7
stress
Cisplatin 0.0016 mg/ml
-0.2
N.D.
+1.3
+0.3
-0.7
carbon source
L-tyrosine (C)
-0.8
N.D.
+1.1
+1.7
+0.1
stress
Benzethonium chloride 0.01 mM
+0.3
N.D.
+1.9
+0.3
-0.2
stress
Def Carbenicillin 0.02 mg/ml
+0.7
N.D.
+1.7
+1.0
-0.5
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