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Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_1875 and Psest_1876 are separated by 135 nucleotides
Psest_1876 and Psest_1877 are separated by 87 nucleotides
Psest_1877 and Psest_1878 are separated by 81 nucleotides
Psest_1878 and Psest_1879 are separated by 0 nucleotides
Psest_1875: Psest_1875 - Adenylate cyclase, family 3 (some proteins contain HAMP domain), at 1,985,565 to 1,987,067
_1875
Psest_1876: Psest_1876 - Predicted membrane protein, at 1,987,203 to 1,987,520
_1876
Psest_1877: Psest_1877 - AraC-type DNA-binding domain-containing proteins, at 1,987,608 to 1,988,657
_1877
Psest_1878: Psest_1878 - Uncharacterized protein conserved in bacteria, at 1,988,739 to 1,989,671
_1878
Psest_1879: Psest_1879 - Trk-type K+ transport systems, membrane components, at 1,989,672 to 1,991,123
_1879
Group
Condition
Psest
_1875
Psest
_1876
Psest
_1877
Psest
_1878
Psest
_1879
stress
Benzalkonium Chloride 0.002 mg/ml
-0.3
-0.6
-1.1
-0.5
-1.3
stress
Gentamicin 0.0016 mg/ml
-0.8
+0.3
+0.2
-0.0
-2.9
stress
D-Cycloserine 0.032 mg/ml
-0.0
+0.3
-0.9
+0.4
-2.9
stress
D-Cycloserine 0.032 mg/ml
-0.1
+0.1
+0.2
-0.3
-3.0
stress
A22 0.005 mg/ml
-0.2
-0.4
-0.8
+0.2
-1.9
RCH2 grown on a colony of Serratia
+0.1
-0.8
+0.9
-1.1
-2.0
lb
LB
-0.2
-0.3
-0.6
+0.4
-2.0
RCH2 grown on a colony of N2F3
+0.2
-0.3
-2.0
+0.9
-1.3
stress
benzoic 0.4 mg/ml
-0.0
+0.6
-0.0
-0.5
-2.2
stress
Spectinomycin 0.00625 mg/ml
+0.2
-0.4
+0.1
+0.4
-2.4
stress
nitrate 200 mM
+0.1
-1.3
-1.4
+0.0
+0.7
stress
Choline Lysine 20 mM
+0.2
+0.4
+0.2
+0.3
-2.7
temperature
LB 30C timecourse1 timepoint 3
-0.2
+0.3
-0.3
+0.8
-2.2
stress
Nickel (II) chloride 1 mM
-0.1
+0.4
+0.6
-0.7
-1.6
stress
A22 0.002 mg/ml
-0.0
+0.1
-0.6
+1.1
-1.9
stress
benzoic 0.4 mg/ml
+0.0
+0.4
-0.4
+0.7
-2.0
RCH2 grown on a colony of Pseudomonas migulae strain N1B4
+0.4
-0.3
+0.8
+0.1
-2.1
stress
benzoic 0.4 mg/ml
-0.1
+0.8
+0.5
+0.3
-2.6
carbon source
L-tyrosine (C)
+0.3
+0.8
+0.1
-0.5
-1.7
carbon source
L-tyrosine (C)
+0.0
-0.9
+1.1
+1.0
-2.0
carbon source
propionate (C)
-0.2
-0.4
-0.7
-1.1
+1.9
stress
nitrate 250 mM
-0.2
-0.4
-1.6
+0.3
+2.5
stress
L-Lysine 200 mM
-0.1
-0.7
+0.3
-0.2
+2.0
stress
Nalidixic 0.00390625 mg/ml
-0.1
-0.6
+0.7
+0.2
+1.8
stress
Phosphomycin 0.012 mg/ml
+0.1
+0.5
-0.6
-0.1
+2.5
RCH2 grown on a colony of ecoli
+0.4
+0.6
+2.2
+0.4
-1.1
stress
methylglyoxal 0.0016 vol%
-0.2
+0.4
-0.2
+0.2
+2.5
stress
Benzethonium chloride 0.0125 mM
-0.3
+0.8
+0.9
+0.4
+1.0
stress
1-ethyl-3-methylimidazolium acetate 40 mM
+0.1
+0.7
+0.2
+0.7
+2.2
stress
Choline chloride 90 mM
+0.1
+0.7
+0.3
+1.1
+1.9
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