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Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_1872 and Psest_1873 are separated by 3 nucleotides
Psest_1873 and Psest_1874 are separated by 131 nucleotides
Psest_1874 and Psest_1875 are separated by 74 nucleotides
Psest_1875 and Psest_1876 are separated by 135 nucleotides
Psest_1872: Psest_1872 - selT/selW/selH selenoprotein domain, at 1,983,437 to 1,983,718
_1872
Psest_1873: Psest_1873 - Predicted permease, DMT superfamily, at 1,983,722 to 1,984,600
_1873
Psest_1874: Psest_1874 - AraC-type DNA-binding domain-containing proteins, at 1,984,732 to 1,985,490
_1874
Psest_1875: Psest_1875 - Adenylate cyclase, family 3 (some proteins contain HAMP domain), at 1,985,565 to 1,987,067
_1875
Psest_1876: Psest_1876 - Predicted membrane protein, at 1,987,203 to 1,987,520
_1876
Group
Condition
Psest
_1872
Psest
_1873
Psest
_1874
Psest
_1875
Psest
_1876
stress
Chlorate 75 mM
-1.0
-1.2
-1.0
-0.2
-0.2
stress
Lactate-nitrate; anaerobic; dichromate stress sample1
-0.4
-1.4
-0.4
-0.1
-0.8
RCH2 grown on a colony of 8R2A
-1.8
-0.8
-0.4
-0.0
+0.1
stress
Lactate-nitrate; anaerobic; dichromate stress sample3
-0.3
-0.9
-0.3
-0.3
-0.8
anaerobic
Nitrite/ lactate media with Nitrite 20mM
-0.7
-0.7
+0.1
-0.1
-0.9
anaerobic
Nitrate/ lactate media with Nitrate 20mM and .05mM Tungsten
-0.8
-0.7
+0.2
-0.0
-0.9
stress
Gentamicin 0.0016 mg/ml
-0.0
-1.3
-0.5
-0.8
+0.3
stress
Cisplatin 0.003 mg/ml
-0.1
-0.5
+0.2
-0.1
-1.7
stress
Nickel (II) chloride 0.9 mM
+0.8
-0.8
-1.5
-0.5
+0.1
RCH2 grown on a colony of Serratia
-1.5
-1.0
+0.5
-0.1
+0.2
temperature
LB 30C timecourse2 timepoint 2
+0.6
-0.9
-0.8
-0.2
-0.2
stress
nitrate 250 mM
-0.5
+0.6
-0.9
-0.2
-0.4
stress
Nickel (II) chloride 0.8 mM
+1.1
-0.9
-0.7
-0.7
+0.0
stress
nitrate 200 mM
+0.5
+0.3
-0.6
+0.1
-1.3
stress
Benzethonium chloride 0.0125 mM
+0.3
-0.4
-1.3
-0.3
+0.8
RCH2 grown on a colony of N2F3
-1.1
-0.9
-0.2
+0.4
+0.9
stress
Choline chloride 90 mM
+0.2
-2.0
+0.4
+0.1
+0.7
stress
perchlorate 12.5 mM
-0.4
+1.2
-0.9
-0.0
-0.1
stress
perchlorate 12.5 mM
-0.3
+0.6
+0.6
-0.1
-0.9
RCH2 grown on a colony of N2C3
+0.9
-0.7
+0.3
+0.2
-0.8
RCH2 grown on a colony of ecoli
-0.3
-1.1
+0.6
+0.4
+0.6
stress
D-Cycloserine 0.032 mg/ml
+0.5
-1.3
+0.7
-0.0
+0.3
stress
Lactate-nitrate; anaerobic; uranyl acetate stress sample1
-0.6
+0.9
+0.7
-0.1
-0.5
stress
Def 2-Furfuraldehyde 0.032 vol%
-0.6
+1.3
+0.3
-0.5
+0.1
nitrogen source
L-Glutamic (N)
-0.1
-1.0
+1.4
+0.1
+0.4
stress
Benzethonium chloride 0.0125 mM
+0.7
+1.2
-0.6
-0.0
+0.8
stress
Furfuryl Alcohol 0.05 vol%
-0.2
+0.7
+0.5
+0.3
+1.0
stress
Def Benzalkonium Chloride 0.002 mg/ml
+0.7
+1.1
+0.2
-0.1
+0.5
RCH2 grown on a colony of Pseudomonas migulae strain N1B4
+0.3
+0.8
+1.0
+0.1
+0.3
carbon source
L-tyrosine (C)
+0.3
+1.4
+0.2
+0.3
+0.8
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