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Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_1788 and Psest_1789 are separated by 21 nucleotides
Psest_1789 and Psest_1790 are separated by 174 nucleotides
Psest_1790 and Psest_1791 overlap by 8 nucleotides
Psest_1791 and Psest_1792 are separated by 4 nucleotides
Psest_1788: Psest_1788 - TIGR01244 family protein, at 1,882,463 to 1,884,211
_1788
Psest_1789: Psest_1789 - Zn-dependent hydrolases, including glyoxylases, at 1,884,233 to 1,885,096
_1789
Psest_1790: Psest_1790 - ABC-type antimicrobial peptide transport system, ATPase component, at 1,885,271 to 1,886,002
_1790
Psest_1791: Psest_1791 - ABC-type transport system, involved in lipoprotein release, permease component, at 1,885,995 to 1,887,215
_1791
Psest_1792: Psest_1792 - RND family efflux transporter, MFP subunit, at 1,887,220 to 1,888,440
_1792
Group
Condition
Psest
_1788
Psest
_1789
Psest
_1790
Psest
_1791
Psest
_1792
stress
nitrite 2.5 mM
-0.0
-0.2
-1.0
-0.6
-1.4
stress
Chlorate 75 mM
+0.0
-0.1
-0.9
-1.4
-0.4
stress
nitrite 2.5 mM
-0.0
+0.1
-1.2
-0.5
-0.8
stress
nitrite 2.5 mM
+0.2
+0.1
-0.8
-0.5
-1.2
stress
perchlorate 25 mM
-0.6
-0.2
-0.1
-0.6
-0.7
stress
sodium fluoride 6.25 mM
+0.0
-0.0
-0.9
-0.2
-0.9
temperature
LB 26C sample1
+0.1
-0.0
-0.5
-0.2
-1.3
stress
perchlorate 25 mM
-0.8
-0.5
-0.1
-0.2
-0.0
vitamin
No vitamins t1
+0.1
-0.2
-0.1
-1.0
-0.2
stress
Nalidixic 0.00390625 mg/ml
-0.4
+0.1
-0.2
+0.6
-1.4
stress
Benzethonium chloride 0.0125 mM
+0.2
-0.2
-0.5
+0.2
-1.0
RCH2 grown on a colony of 8R2A
+0.0
+0.0
-0.5
-1.0
+0.3
carbon source
L-tyrosine (C)
-0.0
+0.4
+0.4
-0.4
-1.0
stress
Thallium(I) acetate 0.1 mg/ml
+0.2
+0.1
+0.6
-0.7
-0.9
radiation
Ionizing radiation, 319.06 Gy,
+0.2
-0.1
+0.5
-0.8
-0.2
RCH2 grown on a colony of Serratia
+0.4
-0.1
+0.2
+0.2
-1.1
stress
Def Carbenicillin 0.008 mg/ml
-0.2
-0.0
-1.3
+0.2
+1.0
stress
perchlorate 25 mM
-0.5
-0.3
+0.3
-0.3
+0.8
stress
Lactate-nitrate; anaerobic; copper stress sample3
+0.1
-0.3
-0.2
-0.3
+1.0
stress
Zinc 0.12 mM
-0.1
+0.1
-0.5
+0.1
+0.9
stress
perchlorate 12.5 mM
-0.6
-0.1
+0.1
+0.8
+0.4
stress
Doxycycline hyclate 0.0002 mg/ml
+0.2
+0.2
+0.8
-0.6
+0.1
RCH2 grown on a colony of N2F3
+0.1
-0.2
+0.8
-0.9
+1.0
RCH2 grown on a colony of Pseudomonas migulae strain N1B4
+0.1
+0.0
+0.6
-0.5
+0.9
carbon source
propionate (C)
-0.1
-0.2
+0.4
+0.3
+0.9
stress
2-Furfuraldehyde 0.05 vol%
-0.1
+0.0
-0.1
+1.1
+0.6
stress
Carbenicillin 0.008 mg/ml
+0.0
+0.3
+0.6
-0.1
+0.7
RCH2 grown on a colony of N2C3
-0.3
+0.0
+0.5
+0.4
+0.9
stress
A22 0.002 mg/ml
-0.0
+0.1
+0.4
+0.8
+0.5
stress
Furfuryl Alcohol 0.3 vol%
-0.1
+0.2
+0.6
+0.3
+0.8
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