Fitness for 5 genes in Pseudomonas stutzeri RCH2

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500 ntPsest_1788 and Psest_1789 are separated by 21 nucleotidesPsest_1789 and Psest_1790 are separated by 174 nucleotidesPsest_1790 and Psest_1791 overlap by 8 nucleotidesPsest_1791 and Psest_1792 are separated by 4 nucleotides Psest_1788: Psest_1788 - TIGR01244 family protein, at 1,882,463 to 1,884,211 _1788 Psest_1789: Psest_1789 - Zn-dependent hydrolases, including glyoxylases, at 1,884,233 to 1,885,096 _1789 Psest_1790: Psest_1790 - ABC-type antimicrobial peptide transport system, ATPase component, at 1,885,271 to 1,886,002 _1790 Psest_1791: Psest_1791 - ABC-type transport system, involved in lipoprotein release, permease component, at 1,885,995 to 1,887,215 _1791 Psest_1792: Psest_1792 - RND family efflux transporter, MFP subunit, at 1,887,220 to 1,888,440 _1792
Group Condition Psest_1788 Psest_1789 Psest_1790 Psest_1791 Psest_1792
stress nitrite 2.5 mM -0.0 -0.2 -1.0 -0.6 -1.4
stress Chlorate 75 mM +0.0 -0.1 -0.9 -1.4 -0.4
stress nitrite 2.5 mM -0.0 +0.1 -1.2 -0.5 -0.8
stress nitrite 2.5 mM +0.2 +0.1 -0.8 -0.5 -1.2
stress perchlorate 25 mM -0.6 -0.2 -0.1 -0.6 -0.7
stress sodium fluoride 6.25 mM +0.0 -0.0 -0.9 -0.2 -0.9
temperature LB 26C sample1 +0.1 -0.0 -0.5 -0.2 -1.3
stress perchlorate 25 mM -0.8 -0.5 -0.1 -0.2 -0.0
vitamin No vitamins t1 +0.1 -0.2 -0.1 -1.0 -0.2
stress Nalidixic 0.00390625 mg/ml -0.4 +0.1 -0.2 +0.6 -1.4
stress Benzethonium chloride 0.0125 mM +0.2 -0.2 -0.5 +0.2 -1.0
RCH2 grown on a colony of 8R2A +0.0 +0.0 -0.5 -1.0 +0.3
carbon source L-tyrosine (C) -0.0 +0.4 +0.4 -0.4 -1.0
stress Thallium(I) acetate 0.1 mg/ml +0.2 +0.1 +0.6 -0.7 -0.9
radiation Ionizing radiation, 319.06 Gy, +0.2 -0.1 +0.5 -0.8 -0.2
RCH2 grown on a colony of Serratia +0.4 -0.1 +0.2 +0.2 -1.1
stress Def Carbenicillin 0.008 mg/ml -0.2 -0.0 -1.3 +0.2 +1.0
stress perchlorate 25 mM -0.5 -0.3 +0.3 -0.3 +0.8
stress Lactate-nitrate; anaerobic; copper stress sample3 +0.1 -0.3 -0.2 -0.3 +1.0
stress Zinc 0.12 mM -0.1 +0.1 -0.5 +0.1 +0.9
stress perchlorate 12.5 mM -0.6 -0.1 +0.1 +0.8 +0.4
stress Doxycycline hyclate 0.0002 mg/ml +0.2 +0.2 +0.8 -0.6 +0.1
RCH2 grown on a colony of N2F3 +0.1 -0.2 +0.8 -0.9 +1.0
RCH2 grown on a colony of Pseudomonas migulae strain N1B4 +0.1 +0.0 +0.6 -0.5 +0.9
carbon source propionate (C) -0.1 -0.2 +0.4 +0.3 +0.9
stress 2-Furfuraldehyde 0.05 vol% -0.1 +0.0 -0.1 +1.1 +0.6
stress Carbenicillin 0.008 mg/ml +0.0 +0.3 +0.6 -0.1 +0.7
RCH2 grown on a colony of N2C3 -0.3 +0.0 +0.5 +0.4 +0.9
stress A22 0.002 mg/ml -0.0 +0.1 +0.4 +0.8 +0.5
stress Furfuryl Alcohol 0.3 vol% -0.1 +0.2 +0.6 +0.3 +0.8
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