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Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_1775 and Psest_1776 are separated by 52 nucleotides
Psest_1776 and Psest_1777 are separated by 57 nucleotides
Psest_1777 and Psest_1778 are separated by 213 nucleotides
Psest_1778 and Psest_1779 are separated by 17 nucleotides
Psest_1775: Psest_1775 - Predicted ATPase (AAA+ superfamily), at 1,875,337 to 1,876,227
_1775
Psest_1776: Psest_1776 - Glutathione S-transferase, at 1,876,280 to 1,876,957
_1776
Psest_1777: Psest_1777 - hypothetical protein, at 1,877,015 to 1,877,782
_1777
Psest_1778: Psest_1778 - tRNA_Glu_TTC, at 1,877,996 to 1,878,071
_1778
Psest_1779: Psest_1779 - tRNA_Gly_GCC, at 1,878,089 to 1,878,164
_1779
Group
Condition
Psest
_1775
Psest
_1776
Psest
_1777
Psest
_1778
Psest
_1779
stress
Fusidic 0.016 mg/ml
-0.6
-0.4
-1.2
N.D.
N.D.
carbon source
propionate (C)
-1.3
-0.1
-0.2
N.D.
N.D.
stress
A22 0.002 mg/ml
-0.4
-0.4
-0.6
N.D.
N.D.
stress
Nalidixic 0.00390625 mg/ml
-0.0
-0.1
-1.2
N.D.
N.D.
anaerobic
Nitrate/ lactate media with Nitrate 20mM and .05mM Tungsten
+0.6
-0.2
-1.6
N.D.
N.D.
stress
Cobalt chloride 0.08 mM
-0.8
-0.2
-0.3
N.D.
N.D.
nitrogen source
Parabanic Acid (N)
+0.1
-0.8
-0.6
N.D.
N.D.
carbon source
RCH2 defined media
+0.3
-0.5
-0.9
N.D.
N.D.
anaerobic
Nitrate/ lactate media with Nitrate 50mM
-0.2
+0.2
-1.1
N.D.
N.D.
stress
Cisplatin 0.003 mg/ml
-0.5
+0.1
-0.7
N.D.
N.D.
stress
Cobalt chloride 0.07 mM
-0.8
+0.4
-0.4
N.D.
N.D.
nitrogen source
L-Isoleucine (N)
+0.3
-0.5
-0.6
N.D.
N.D.
stress
perchlorate 25 mM
-0.4
+0.3
-0.7
N.D.
N.D.
stress
Def Carbenicillin 0.008 mg/ml
+0.6
-0.5
-0.7
N.D.
N.D.
stress
Def Neomycin 0.0008 mg/ml
+0.1
+0.3
-0.9
N.D.
N.D.
stress
Furfuryl Alcohol 0.2 vol%
+0.5
-0.5
-0.5
N.D.
N.D.
carbon source
butyrate (C)
+0.5
-0.3
-0.6
N.D.
N.D.
carbon source
L-Alanine (C)
+0.5
-0.4
-0.5
N.D.
N.D.
stress
Carbenicillin 0.008 mg/ml
+0.6
-0.4
-0.3
N.D.
N.D.
carbon source
L-tyrosine (C)
+0.9
-0.4
-0.3
N.D.
N.D.
stress
Spectinomycin 0.00625 mg/ml
+0.7
-0.0
-0.5
N.D.
N.D.
RCH2 grown on a colony of Pseudomonas migulae strain N1B4
+0.8
-0.1
-0.4
N.D.
N.D.
nutrient
Min media with glucose
+0.8
+0.2
-0.4
N.D.
N.D.
RCH2 grown on a colony of N2C3
+0.6
+0.5
+0.2
N.D.
N.D.
stress
2-Furfuraldehyde 0.05 vol%
+0.2
+0.4
+0.7
N.D.
N.D.
stress
Lactate-nitrate; anaerobic sample3
+0.5
+0.5
+0.4
N.D.
N.D.
stress
Cobalt chloride 0.08 mM
+0.4
+0.6
+0.5
N.D.
N.D.
stress
Nalidixic 0.00390625 mg/ml
+0.7
+0.4
+0.6
N.D.
N.D.
RCH2 grown on a colony of Serratia
+1.0
+0.5
+0.4
N.D.
N.D.
carbon source
L-tyrosine (C)
+0.6
+0.5
+0.9
N.D.
N.D.
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