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Protein
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Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_1721 and Psest_1722 overlap by 11 nucleotides
Psest_1722 and Psest_1723 are separated by 3 nucleotides
Psest_1723 and Psest_1724 are separated by 230 nucleotides
Psest_1724 and Psest_1725 are separated by 1 nucleotides
Psest_1721: Psest_1721 - Flagellar biosynthesis/type III secretory pathway protein, at 1,827,866 to 1,828,642
_1721
Psest_1722: Psest_1722 - flagellar protein export ATPase FliI, at 1,828,632 to 1,829,990
_1722
Psest_1723: Psest_1723 - flagellar export protein FliJ, at 1,829,994 to 1,830,446
_1723
Psest_1724: Psest_1724 - Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor), at 1,830,677 to 1,830,982
_1724
Psest_1725: Psest_1725 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 1,830,984 to 1,832,675
_1725
Group
Condition
Psest
_1721
Psest
_1722
Psest
_1723
Psest
_1724
Psest
_1725
stress
Lactate-nitrate; anaerobic; uranyl acetate stress sample3
+0.3
+0.8
+1.2
-4.7
+0.6
stress
Def Benzalkonium Chloride 0.002 mg/ml
-1.0
-0.0
-0.3
-3.7
+3.8
stress
Lactate-nitrate; anaerobic; uranyl acetate stress sample1
+0.8
+0.9
+1.0
-4.6
+0.6
stress
nitrate 250 mM
-0.6
+1.3
+0.5
-3.7
+1.8
carbon source
butyrate (C)
+0.7
+0.8
+0.7
-4.1
+2.2
carbon source
butyrate (C)
+1.0
+0.9
+0.8
-4.5
+2.3
stress
Def Polymyxin B sulfate 0.00008 mg/ml
+0.1
+1.0
+0.6
-3.5
+2.3
stress
Gentamicin 0.0016 mg/ml
+1.4
+2.1
+1.2
-5.4
+2.0
stress
Def Polymyxin B sulfate 0.0001 mg/ml
+0.9
+1.2
+0.6
-3.5
+2.5
carbon source
butyrate (C)
+0.4
+1.6
+0.1
-4.3
+4.0
carbon source
L-Glutamine (C)
+1.4
+1.7
+1.3
-1.5
+1.8
carbon source
L-Glutamine (C)
+1.7
+1.8
+1.6
-1.9
+1.8
carbon source
L-Glutamine (C)
+1.9
+1.8
+1.5
-1.9
+1.8
stress
Def Carbenicillin 0.008 mg/ml
+0.9
+2.4
+1.1
-1.7
+2.6
stress
Chlorite 0.06 mM
+2.3
+2.2
+2.0
-0.1
-0.5
stress
Cephalothin 0.04 mg/ml
+1.5
+2.5
+1.9
-3.1
+3.8
nitrogen source
nitrite (N)
+0.7
+1.6
+1.4
-0.7
+4.0
stress
Bacitracin 0.25 mg/ml
+2.5
+3.1
+2.9
+0.4
-0.7
nitrogen source
L-Isoleucine (N)
+1.8
+2.0
+1.7
-0.8
+4.0
stress
Bacitracin 0.25 mg/ml
+3.4
+3.1
+2.8
+1.3
-0.6
vitamin
With vitamins t1
+3.8
+4.1
+3.6
-0.5
-0.6
vitamin
With vitamins t2
+4.0
+4.2
+3.8
+0.0
-0.4
nutrient
Min media with glucose
+4.3
+4.3
+3.8
-0.2
-0.5
vitamin
No vitamins t1
+3.9
+4.2
+4.3
+0.6
-0.7
vitamin
No vitamins t2
+4.3
+4.5
+4.7
-0.2
-0.6
nutrient
L-Histidine
+4.6
+4.0
+3.7
+0.5
+0.1
nutrient
L-Histidine
+4.6
+4.6
+4.2
+0.5
+0.2
nutrient
Min media with glucose
+5.0
+4.6
+4.5
+0.8
-0.6
nutrient
L-tyrosine
+5.7
+5.3
+5.2
-0.5
-0.2
nutrient
L-tyrosine
+5.1
+5.5
+5.4
+0.1
-0.5
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