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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_1700 and Psest_1701 are separated by 31 nucleotides
Psest_1701 and Psest_1702 are separated by 120 nucleotides
Psest_1702 and Psest_1703 are separated by 53 nucleotides
Psest_1703 and Psest_1704 are separated by 63 nucleotides
Psest_1700: Psest_1700 - Transcriptional regulator, at 1,806,631 to 1,807,251
_1700
Psest_1701: Psest_1701 - Fe-S oxidoreductase, at 1,807,283 to 1,808,179
_1701
Psest_1702: Psest_1702 - hypothetical protein, at 1,808,300 to 1,808,911
_1702
Psest_1703: Psest_1703 - Uncharacterized protein conserved in bacteria, at 1,808,965 to 1,809,531
_1703
Psest_1704: Psest_1704 - Dehydrogenases (flavoproteins), at 1,809,595 to 1,811,250
_1704
Group
Condition
Psest
_1700
Psest
_1701
Psest
_1702
Psest
_1703
Psest
_1704
stress
Gentamicin 0.0016 mg/ml
-3.5
-0.3
+0.1
+0.0
-3.0
temperature
LB 30C timecourse1 timepoint 3
-1.1
-0.4
-0.3
-0.3
-4.1
temperature
Glucose defined media 26C sample1
-0.2
+0.1
-0.1
-0.0
-4.5
stress
Def Chloride 400 mM
-2.7
+0.0
-0.1
-0.2
-1.8
carbon source
L-Proline (C)
-0.3
-0.2
-0.3
-0.0
-3.8
temperature
LB 30C timecourse1 timepoint 2
-0.7
-0.2
-0.2
+0.1
-3.5
carbon source
Glucose defined media
-0.4
-0.1
-0.2
-0.1
-3.7
stress
Cobalt chloride 0.06 mM
-0.7
-0.0
-0.1
-0.2
-3.3
temperature
Glucose defined 30C timecourse1 timepoint 3
-0.4
-0.2
-0.2
-0.1
-3.5
temperature
Glucose defined 30C timecourse1 timepoint 2
+0.0
-0.2
-0.2
-0.1
-3.9
stress
Def Cephalothin 0.04 mg/ml
-1.0
-0.2
-0.3
-0.0
-2.5
stress
Nickel (II) chloride 0.8 mM
-0.6
-0.2
-0.1
-0.4
-2.7
stress
nitrate 250 mM
-2.3
-0.7
+0.4
+0.3
-1.4
temperature
Glucose defined 30C timecourse1 timepoint 1
-0.3
-0.0
-0.0
-0.1
-3.3
temperature
Glucose defined media 37C sample1
-0.3
-0.1
-0.1
+0.0
-3.0
carbon source
L-Lactate (C)
+0.0
-0.3
-0.1
+0.2
-3.4
carbon source
L-Asparagine (C)
-0.0
+0.0
-0.1
-0.0
-3.4
stress
Benzethonium chloride 0.01 mM
-0.6
-0.6
+0.4
-0.3
-1.5
stress
1-ethyl-3-methylimidazolium acetate 40 mM
-1.2
+0.4
-0.2
-0.0
-1.6
stress
Def Carbenicillin 0.02 mg/ml
-0.7
-0.4
-0.4
-0.5
+2.1
stress
Bacitracin 0.25 mg/ml
+0.1
-0.3
-0.5
+0.2
+2.3
stress
Furfuryl Alcohol 0.05 vol%
+0.2
-0.3
-0.3
-0.4
+2.8
stress
Cephalothin 0.04 mg/ml
-0.2
-0.4
-0.1
+0.2
+3.4
carbon source
propionate (C)
+0.6
-0.3
-0.2
-0.2
+4.1
carbon source
butyrate (C)
+8.9
-0.0
-0.2
-1.6
-1.7
stress
Def Benzalkonium Chloride 0.002 mg/ml
+0.6
+0.0
+0.4
+0.8
+3.6
carbon source
butyrate (C)
+10.1
-0.0
-0.2
-1.6
-1.6
stress
A22 0.005 mg/ml
-0.4
+0.1
+0.2
-0.1
+7.0
carbon source
propionate (C)
+2.2
+0.1
-0.3
+0.2
+5.5
carbon source
butyrate (C)
+10.9
-0.3
+0.2
-1.9
-0.2
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