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Protein
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Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_1699 and Psest_1700 are separated by 75 nucleotides
Psest_1700 and Psest_1701 are separated by 31 nucleotides
Psest_1701 and Psest_1702 are separated by 120 nucleotides
Psest_1702 and Psest_1703 are separated by 53 nucleotides
Psest_1699: Psest_1699 - Selenocysteine lyase, at 1,805,422 to 1,806,555
_1699
Psest_1700: Psest_1700 - Transcriptional regulator, at 1,806,631 to 1,807,251
_1700
Psest_1701: Psest_1701 - Fe-S oxidoreductase, at 1,807,283 to 1,808,179
_1701
Psest_1702: Psest_1702 - hypothetical protein, at 1,808,300 to 1,808,911
_1702
Psest_1703: Psest_1703 - Uncharacterized protein conserved in bacteria, at 1,808,965 to 1,809,531
_1703
Group
Condition
Psest
_1699
Psest
_1700
Psest
_1701
Psest
_1702
Psest
_1703
stress
Gentamicin 0.0016 mg/ml
-0.4
-3.5
-0.3
+0.1
+0.0
stress
Def Carbenicillin 0.02 mg/ml
-1.0
-0.7
-0.4
-0.4
-0.5
stress
Def Chloride 400 mM
-0.0
-2.7
+0.0
-0.1
-0.2
stress
nitrate 250 mM
-0.5
-2.3
-0.7
+0.4
+0.3
stress
Chlorate 75 mM
-1.1
-0.4
-1.0
-0.2
+0.1
temperature
LB 30C timecourse1 timepoint 3
-0.4
-1.1
-0.4
-0.3
-0.3
stress
Nickel (II) chloride 0.8 mM
-0.0
-1.5
-0.0
-0.2
-0.4
stress
Nickel (II) chloride 1 mM
-0.5
-0.7
-0.2
-0.3
-0.4
stress
Lactate-nitrate; anaerobic; copper stress sample1
-0.8
-0.6
-0.5
+0.0
-0.1
stress
Def Carbenicillin 0.008 mg/ml
-0.6
-0.7
-0.9
-0.0
+0.2
stress
Fusidic 0.016 mg/ml
-0.5
-1.1
-0.2
-0.3
+0.2
RCH2 grown on a colony of Pseudomonas migulae strain N1B4
-1.0
-0.8
+0.4
+0.3
-0.7
stress
Benzethonium chloride 0.01 mM
-0.0
-1.7
-0.5
+0.2
+0.1
metal limitation
Lactate-nitrite; anaerobic; sample3
-0.5
-1.0
-0.4
+0.1
-0.0
stress
1-ethyl-3-methylimidazolium acetate 40 mM
-0.7
-1.2
+0.4
-0.2
-0.0
stress
Benzethonium chloride 0.01 mM
-0.4
-0.6
-0.6
+0.4
-0.3
metal limitation
Lactate-nitrite with YE; anaerobic; with copper; sample1
+0.2
-1.2
-0.4
+0.1
-0.1
metal limitation
Lactate-nitrite with YE; anaerobic; sample2
+0.1
-1.2
-0.6
+0.1
+0.1
stress
Lactate-nitrate; anaerobic; copper stress sample3
+0.5
-0.8
-0.6
-0.1
-0.2
stress
Chloride 200 mM
-1.2
+0.6
-0.2
-0.2
-0.0
radiation
Ionizing radiation, 319.06 Gy,
+0.4
-1.6
+0.0
+0.1
+0.1
stress
sodium fluoride 8.5 mM
-0.0
-1.5
+0.3
+0.1
+0.3
stress
Def 2-Furfuraldehyde 0.032 vol%
-2.0
-0.1
+0.4
+0.1
+0.8
carbon source
L-tyrosine (C)
-0.8
+0.9
-0.2
+0.3
+0.1
carbon source
propionate (C)
-1.0
+2.2
+0.1
-0.3
+0.2
stress
Def Benzalkonium Chloride 0.002 mg/ml
-0.5
+0.6
+0.0
+0.4
+0.8
stress
Polymyxin B sulfate 0.0001 mg/ml
+0.7
+1.2
+0.0
+0.1
+0.1
carbon source
butyrate (C)
-0.6
+8.9
-0.0
-0.2
-1.6
carbon source
butyrate (C)
-1.0
+10.1
-0.0
-0.2
-1.6
carbon source
butyrate (C)
-0.3
+10.9
-0.3
+0.2
-1.9
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