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Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_1646 and Psest_1647 are separated by 177 nucleotides
Psest_1647 and Psest_1648 are separated by 99 nucleotides
Psest_1648 and Psest_1649 are separated by 79 nucleotides
Psest_1649 and Psest_1650 are separated by 186 nucleotides
Psest_1646: Psest_1646 - Predicted ICC-like phosphoesterases, at 1,749,301 to 1,749,990
_1646
Psest_1647: Psest_1647 - Lhr-like helicases, at 1,750,168 to 1,752,759
_1647
Psest_1648: Psest_1648 - ATP-dependent DNA ligase, at 1,752,859 to 1,754,568
_1648
Psest_1649: Psest_1649 - Predicted exonuclease of the beta-lactamase fold involved in RNA processing, at 1,754,648 to 1,755,661
_1649
Psest_1650: Psest_1650 - hypothetical protein, at 1,755,848 to 1,756,417
_1650
Group
Condition
Psest
_1646
Psest
_1647
Psest
_1648
Psest
_1649
Psest
_1650
stress
Def Carbenicillin 0.008 mg/ml
+0.1
-1.2
-0.7
-0.4
-1.1
stress
Def A22 0.015 mg/ml
-0.3
-0.7
-0.7
-0.4
-0.8
stress
Def Benzalkonium Chloride 0.002 mg/ml
-0.1
-1.7
-0.5
-0.2
+0.0
nitrogen source
nitrate (N)
-0.4
-0.7
-0.7
-0.2
-0.5
stress
Cobalt chloride 0.07 mM
-0.2
-1.5
-0.3
-0.1
-0.2
stress
Def Lomefloxacin 0.00004 mM
-0.7
-0.5
-0.3
-0.4
-0.4
stress
Def Dimethyl Sulfoxide 5 vol%
-0.2
-0.6
-0.3
-0.1
-1.0
stress
Thallium(I) acetate 0.1 mg/ml
-0.1
-1.3
-0.1
-0.1
-0.3
stress
Def Cisplatin 0.0002 mg/ml
-0.3
-0.6
-0.4
-0.5
-0.0
nitrogen source
L-Alanine (N)
-0.5
-0.4
-0.3
-0.3
-0.3
lb
LB
-0.2
-0.3
-0.4
-0.4
-0.6
stress
Paraquat dichloride 0.015 mg/ml
-0.7
-0.7
-0.2
+0.1
-0.3
lb
LB
-0.5
+0.1
-0.2
-0.6
-0.4
stress
Nickel (II) chloride 1 mM
-0.7
-0.4
+0.2
-0.0
-0.7
stress
Def 2-Furfuraldehyde 0.032 vol%
+0.2
-1.3
-0.2
+0.0
-0.4
stress
Def Carbenicillin 0.02 mg/ml
+0.1
-0.8
+0.2
-0.4
-0.5
stress
Nalidixic 0.00390625 mg/ml
-0.1
-0.6
+0.0
+0.3
-0.9
stress
L-Lysine 200 mM
+0.3
-0.5
-0.2
-0.4
-0.4
RCH2 grown on a colony of Serratia
-0.1
-1.0
+0.2
+0.1
-0.5
stress
Cisplatin 0.0016 mg/ml
+0.1
-1.4
+0.4
-0.1
-0.1
nutrient
L-tyrosine
+0.1
-1.3
+0.2
+0.1
-0.0
anaerobic
Nitrate/ lactate media with Nitrate 50mM
-0.1
-0.4
+0.4
+0.2
-0.8
stress
Zinc 0.12 mM
+0.3
-0.7
-0.2
-0.3
+0.4
nitrogen source
Putrescine (N)
-0.0
-1.0
+0.4
+0.2
+0.2
carbon source
propionate (C)
+0.0
+1.1
-0.2
+0.1
-0.8
RCH2 grown on a colony of ecoli
-0.2
+0.4
+0.3
-0.5
+0.5
stress
Aluminum chloride 0.3 mM
+0.3
+0.7
-0.3
-0.2
+0.3
stress
Vanillin 2 mM
+0.1
+0.6
+0.4
+0.2
-0.4
RCH2 grown on a colony of N2C3
-0.7
+1.3
+0.5
-0.4
+0.3
RCH2 grown on a colony of ecoli
+0.1
+1.0
+0.2
-0.1
+0.7
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