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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_1644 and Psest_1645 are separated by 194 nucleotides
Psest_1645 and Psest_1646 overlap by 23 nucleotides
Psest_1646 and Psest_1647 are separated by 177 nucleotides
Psest_1647 and Psest_1648 are separated by 99 nucleotides
Psest_1644: Psest_1644 - Erythromycin esterase homolog, at 1,747,561 to 1,748,895
_1644
Psest_1645: Psest_1645 - hypothetical protein, at 1,749,090 to 1,749,323
_1645
Psest_1646: Psest_1646 - Predicted ICC-like phosphoesterases, at 1,749,301 to 1,749,990
_1646
Psest_1647: Psest_1647 - Lhr-like helicases, at 1,750,168 to 1,752,759
_1647
Psest_1648: Psest_1648 - ATP-dependent DNA ligase, at 1,752,859 to 1,754,568
_1648
Group
Condition
Psest
_1644
Psest
_1645
Psest
_1646
Psest
_1647
Psest
_1648
stress
Def Benzalkonium Chloride 0.002 mg/ml
-0.4
N.D.
-0.1
-1.7
-0.5
nitrogen source
nitrate (N)
-0.4
N.D.
-0.4
-0.7
-0.7
stress
Def 2-Furfuraldehyde 0.032 vol%
-0.8
N.D.
+0.2
-1.3
-0.2
stress
Cobalt chloride 0.07 mM
+0.1
N.D.
-0.2
-1.5
-0.3
stress
Benzalkonium Chloride 0.002 mg/ml
-0.6
N.D.
-0.2
-0.7
-0.4
stress
Def Lomefloxacin 0.00004 mM
-0.3
N.D.
-0.7
-0.5
-0.3
stress
Def Carbenicillin 0.008 mg/ml
+0.1
N.D.
+0.1
-1.2
-0.7
nitrogen source
Glycine (N)
-0.3
N.D.
-0.6
-0.8
+0.0
stress
Def A22 0.015 mg/ml
+0.1
N.D.
-0.3
-0.7
-0.7
stress
Def 5-Hydroxymethylfurfural 5 mM
-0.3
N.D.
-0.1
-0.9
-0.3
stress
Paraquat dichloride 0.015 mg/ml
+0.0
N.D.
-0.7
-0.7
-0.2
stress
Def Cisplatin 0.0002 mg/ml
-0.1
N.D.
-0.3
-0.6
-0.4
stress
Nickel (II) chloride 1 mM
-0.4
N.D.
-0.7
-0.4
+0.2
stress
Thallium(I) acetate 0.1 mg/ml
+0.4
N.D.
-0.1
-1.3
-0.1
nutrient
L-tyrosine
-0.1
N.D.
+0.1
-1.3
+0.2
stress
Thallium(I) acetate 0.08 mg/ml
-0.6
N.D.
+0.0
-0.8
+0.4
stress
Nickel (II) chloride 0.9 mM
+0.3
N.D.
+0.1
-0.9
-0.3
stress
Choline chloride 90 mM
+0.6
N.D.
-0.1
-0.9
-0.2
stress
acetate 80 mM
+0.2
N.D.
+0.2
-0.9
-0.2
nitrogen source
Putrescine (N)
-0.0
N.D.
-0.0
-1.0
+0.4
stress
1-ethyl-3-methylimidazolium acetate 20 mM
-0.7
N.D.
+0.4
-0.4
+0.1
stress
Cisplatin 0.0016 mg/ml
+0.2
N.D.
+0.1
-1.4
+0.4
stress
Furfuryl Alcohol 0.2 vol%
+0.4
N.D.
+0.1
-0.6
-0.5
stress
nitrate 200 mM
-0.8
N.D.
-0.1
+0.8
+0.2
stress
nitrate 200 mM
-0.5
N.D.
+0.5
+0.4
+0.2
RCH2 grown on a colony of N2C3
-0.5
N.D.
-0.7
+1.3
+0.5
RCH2 grown on a colony of ecoli
-0.6
N.D.
+0.1
+1.0
+0.2
RCH2 grown on a colony of 8R2A
-0.5
N.D.
+0.3
+0.7
+0.2
stress
Aluminum chloride 0.3 mM
+0.3
N.D.
+0.3
+0.7
-0.3
carbon source
propionate (C)
+0.3
N.D.
+0.0
+1.1
-0.2
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