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Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_1621 and Psest_1622 are separated by 9 nucleotides
Psest_1622 and Psest_1623 are separated by 94 nucleotides
Psest_1623 and Psest_1624 are separated by 28 nucleotides
Psest_1624 and Psest_1625 are separated by 57 nucleotides
Psest_1621: Psest_1621 - Uncharacterized protein conserved in bacteria, at 1,725,084 to 1,726,214
_1621
Psest_1622: Psest_1622 - hypothetical protein, at 1,726,224 to 1,726,646
_1622
Psest_1623: Psest_1623 - Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family, at 1,726,741 to 1,727,295
_1623
Psest_1624: Psest_1624 - Transcriptional regulator, at 1,727,324 to 1,728,232
_1624
Psest_1625: Psest_1625 - hypothetical protein, at 1,728,290 to 1,728,610
_1625
Group
Condition
Psest
_1621
Psest
_1622
Psest
_1623
Psest
_1624
Psest
_1625
nitrogen source
nitrite (N)
+0.2
-4.8
-1.3
+0.1
+0.8
nitrogen source
nitrite (N)
+0.0
-3.8
-1.7
-0.1
+1.2
nitrogen source
nitrite (N)
-0.1
-4.3
-1.3
-0.3
+1.9
nitrogen source
nitrite (N)
-0.2
-3.6
-1.1
-0.7
+2.5
carbon source
Anaerobic, Glucose Nitrate sample3
+0.1
-0.5
-0.7
-0.2
-1.6
anaerobic
Nitrite/ lactate media with Nitrite 20mM
-0.2
-1.1
-0.6
+0.2
-0.5
stress
Nalidixic 0.00390625 mg/ml
-0.1
-1.1
+0.3
-0.2
-0.9
stress
Furfuryl Alcohol 0.05 vol%
+0.2
-0.9
+0.7
+0.0
-2.0
stress
nitrite 2.5 mM
+0.0
-1.8
-0.5
+0.1
+0.5
stress
Bacitracin 0.25 mg/ml
+0.1
-1.5
+0.4
+0.1
-0.5
stress
methylglyoxal 0.0016 vol%
+0.1
-1.4
+0.2
+0.4
-0.7
stress
nitrite 2.5 mM
-0.4
-1.4
+0.3
-0.4
+0.8
stress
nitrite 2.5 mM
-0.4
-1.4
+0.2
-0.3
+1.0
carbon source
propionate (C)
+0.1
+0.3
+0.8
+0.3
-2.2
stress
Carbenicillin 0.0065 mg/ml
-0.2
+0.8
-0.6
+0.3
-0.8
RCH2 grown on a colony of N2C3
+0.6
+0.7
+0.1
-0.4
-1.4
RCH2 grown on a colony of Pseudomonas migulae strain N1B4
-0.0
+0.1
-1.2
-0.1
+1.4
RCH2 grown on a colony of Serratia
+0.4
+0.4
+0.3
+0.7
-1.5
nitrogen source
L-Isoleucine (N)
-0.1
-0.6
-0.1
-0.4
+1.5
carbon source
Ethanol (C)
-0.1
+0.0
-0.7
-0.2
+1.7
RCH2 grown on a colony of N2A2
+0.5
+0.0
-0.5
-0.5
+1.7
RCH2 grown on a colony of 8R2A
-0.2
+0.7
-0.3
-0.1
+1.5
stress
Def Polymyxin B sulfate 0.00008 mg/ml
+0.0
+0.2
-0.4
-0.2
+2.1
radiation
Ionizing radiation, 319.06 Gy,
+0.1
+0.7
-0.2
-0.1
+1.6
carbon source
L-tyrosine (C)
+0.3
+0.2
-0.7
-0.6
+2.9
nitrogen source
L-Valine (N)
-0.1
+0.1
+0.0
-0.1
+2.3
radiation
Ionizing radiation, 319.06 Gy,
-0.0
+0.3
+0.8
-0.1
+1.4
stress
Def Polymyxin B sulfate 0.0001 mg/ml
+0.0
+0.4
-0.1
-0.1
+2.2
RCH2 grown on a colony of N2A2
+0.4
+0.6
+0.2
+0.3
+1.3
nitrogen source
L-Valine (N)
-0.2
+0.6
+0.0
+0.2
+2.4
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