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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_1602 and Psest_1603 are separated by 139 nucleotides
Psest_1603 and Psest_1604 overlap by 1 nucleotides
Psest_1604 and Psest_1605 overlap by 4 nucleotides
Psest_1605 and Psest_1606 are separated by 81 nucleotides
Psest_1602: Psest_1602 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 1,705,822 to 1,706,499
_1602
Psest_1603: Psest_1603 - Thiol:disulfide interchange protein, at 1,706,639 to 1,708,375
_1603
Psest_1604: Psest_1604 - Thiol-disulfide isomerase and thioredoxins, at 1,708,375 to 1,709,190
_1604
Psest_1605: Psest_1605 - Protein-disulfide isomerase, at 1,709,187 to 1,709,954
_1605
Psest_1606: Psest_1606 - hypothetical protein, at 1,710,036 to 1,710,707
_1606
Group
Condition
Psest
_1602
Psest
_1603
Psest
_1604
Psest
_1605
Psest
_1606
nitrogen source
L-Isoleucine (N)
-2.5
-0.5
-0.4
-0.6
-0.0
stress
Nalidixic 0.00390625 mg/ml
-0.0
-0.3
-1.8
-0.6
-0.4
stress
Bacitracin 0.25 mg/ml
-2.3
-0.3
+0.0
+0.0
-0.4
lb
LB
-1.7
-0.2
-0.4
-0.6
-0.2
stress
Nalidixic 0.00390625 mg/ml
-0.3
-0.3
-1.3
-0.3
-0.6
stress
A22 0.005 mg/ml
-2.2
-0.6
+0.4
-0.3
+0.1
vitamin
With vitamins t2
-1.1
-0.0
-0.4
-0.3
-0.6
lb
LB
-2.3
-0.0
+0.2
-0.2
-0.1
stress
Polymyxin B sulfate 0.0001 mg/ml
-1.5
-0.7
-0.1
-0.3
+0.3
RCH2 grown on a colony of N2F3
-1.1
-0.0
+0.4
-0.2
-1.3
vitamin
No vitamins t2
-1.9
+0.2
-0.3
-0.1
+0.1
stress
Nickel (II) chloride 0.75 mM
-1.4
-0.3
-0.5
+0.2
-0.2
vitamin
No vitamins t1
-1.5
+0.2
-0.4
-0.2
-0.1
stress
Def 2-Furfuraldehyde 0.032 vol%
-1.9
-0.2
+0.7
-0.4
-0.2
lb
LB
-1.6
-0.4
-0.2
+0.1
+0.2
RCH2 grown on a colony of Pseudomonas migulae strain N1B4
-1.5
+0.2
+0.5
-0.2
-0.2
stress
Cephalothin 0.04 mg/ml
-1.2
+0.2
+0.7
-0.6
-0.1
RCH2 grown on a colony of N2F3
+0.8
-0.4
-1.2
+0.1
-0.2
stress
syringaldehyde 4 mM
-1.2
-0.6
+0.8
+0.3
+0.1
stress
Spectinomycin 0.00625 mg/ml
-1.0
+0.3
+0.9
+0.1
-0.5
temperature
LB 30C timecourse1 timepoint 2
-1.5
+0.4
+0.6
+0.1
+0.2
RCH2 grown on a colony of 8R2A
-1.4
-0.2
+1.0
+0.6
+0.1
stress
2-Furfuraldehyde 0.05 vol%
-0.8
-0.2
+0.6
+0.5
+0.1
stress
Def Thallium(I) acetate 0.125 mg/ml
+1.8
-0.2
-0.6
+0.2
+0.1
stress
Furfuryl Alcohol 0.05 vol%
+0.7
+0.7
-0.4
+0.4
-0.1
stress
Chlorate 75 mM
-0.2
+0.3
+0.4
+0.4
+1.1
stress
Def Carbenicillin 0.008 mg/ml
+1.5
+0.9
+0.4
-0.7
+0.1
lb
LB
+1.1
+0.4
-0.0
+0.4
+0.4
nitrogen source
Putrescine (N)
+1.1
+0.4
+0.3
+0.2
+0.3
stress
Def Carbenicillin 0.02 mg/ml
+0.9
+1.0
+0.5
-0.2
+0.7
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