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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psest_1560 and Psest_1561 are separated by 11 nucleotides
Psest_1561 and Psest_1562 are separated by 73 nucleotides
Psest_1562 and Psest_1563 are separated by 63 nucleotides
Psest_1563 and Psest_1564 are separated by 33 nucleotides
Psest_1560: Psest_1560 - hypothetical protein, at 1,661,131 to 1,661,475
_1560
Psest_1561: Psest_1561 - Uncharacterized conserved protein, at 1,661,487 to 1,662,347
_1561
Psest_1562: Psest_1562 - Uncharacterized protein conserved in bacteria, at 1,662,421 to 1,663,113
_1562
Psest_1563: Psest_1563 - Protein of unknown function (DUF548)., at 1,663,177 to 1,663,953
_1563
Psest_1564: Psest_1564 - Transcriptional regulator, at 1,663,987 to 1,664,622
_1564
Group
Condition
Psest
_1560
Psest
_1561
Psest
_1562
Psest
_1563
Psest
_1564
RCH2 grown on a colony of 8R2A
+0.4
-0.2
-0.7
-5.6
N.D.
stress
nitrate 250 mM
-0.9
+0.0
-1.5
-1.4
N.D.
stress
Polymyxin B sulfate 0.0001 mg/ml
-1.3
-0.7
-1.1
-0.4
N.D.
nitrogen source
L-Isoleucine (N)
-0.6
-0.5
-1.4
-0.9
N.D.
stress
sodium fluoride 6.25 mM
-0.4
-0.6
-1.0
-1.2
N.D.
stress
Bacitracin 0.25 mg/ml
-0.5
-0.5
-1.4
-0.5
N.D.
stress
nitrite 2.5 mM
-0.4
-0.1
-1.3
-1.2
N.D.
stress
Chloride 200 mM
-0.4
-0.2
-1.7
-0.5
N.D.
lb
LB
-0.3
-0.3
-0.7
-1.5
N.D.
stress
Lomefloxacin 0.0001 mM
+0.0
-0.1
-0.8
-1.5
N.D.
stress
Nalidixic 0.00390625 mg/ml
-0.1
+0.4
-0.3
-2.4
N.D.
stress
Gentamicin 0.0016 mg/ml
-0.2
+0.1
-0.3
-1.8
N.D.
stress
methylglyoxal 0.0016 vol%
+0.3
-0.0
-1.4
-0.9
N.D.
carbon source
L-tyrosine (C)
-0.2
+0.3
-1.0
-0.9
N.D.
stress
Paraquat dichloride 0.015 mg/ml
-0.3
-0.5
+0.4
-1.3
N.D.
stress
Cobalt chloride 0.05 mM
-0.5
+0.1
+0.7
-1.8
N.D.
stress
Nalidixic 0.00390625 mg/ml
-1.2
+0.1
-1.5
+1.3
N.D.
RCH2 grown on a colony of N2F3
+1.0
-0.6
-0.9
-0.5
N.D.
carbon source
L-tyrosine (C)
+0.3
+0.5
-0.4
-1.2
N.D.
RCH2 grown on a colony of ecoli
+0.8
+0.1
-1.6
+0.1
N.D.
stress
Def Carbenicillin 0.008 mg/ml
-0.0
+1.1
-0.6
-0.7
N.D.
nutrient
Min media with glucose
+0.1
+0.1
-1.3
+1.4
N.D.
nitrogen source
L-Citrulline (N)
-0.2
-0.1
-0.8
+1.5
N.D.
RCH2 grown on a colony of Serratia
+0.5
-0.2
-1.3
+1.6
N.D.
stress
Def Lomefloxacin 0.00004 mM
+0.4
+0.4
+1.0
-0.6
N.D.
carbon source
propionate (C)
+0.7
+0.2
+0.8
+0.7
N.D.
carbon source
Glucose defined media
+0.5
+0.5
+1.1
+0.5
N.D.
carbon source
L-Proline (C)
+0.6
+0.6
+0.1
+1.3
N.D.
temperature
Glucose defined 30C timecourse1 timepoint 3
+0.6
+0.4
+1.2
+0.6
N.D.
temperature
LB 30C timecourse1 timepoint 2
+0.7
+0.4
+1.6
+0.9
N.D.
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