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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_1555 and Psest_1556 are separated by 275 nucleotides
Psest_1556 and Psest_1557 are separated by 250 nucleotides
Psest_1557 and Psest_1558 are separated by 244 nucleotides
Psest_1558 and Psest_1559 are separated by 144 nucleotides
Psest_1555: Psest_1555 - hypothetical protein, at 1,655,444 to 1,655,836
_1555
Psest_1556: Psest_1556 - hypothetical protein, at 1,656,112 to 1,656,462
_1556
Psest_1557: Psest_1557 - Phosphoenolpyruvate carboxylase, at 1,656,713 to 1,659,352
_1557
Psest_1558: Psest_1558 - adenylate kinases, at 1,659,597 to 1,660,244
_1558
Psest_1559: Psest_1559 - universal bacterial protein YeaZ, at 1,660,389 to 1,661,066
_1559
Group
Condition
Psest
_1555
Psest
_1556
Psest
_1557
Psest
_1558
Psest
_1559
carbon source
L-tyrosine (C)
N.D.
+0.7
-4.5
N.D.
N.D.
carbon source
L-tyrosine (C)
N.D.
-0.0
-3.7
N.D.
N.D.
carbon source
propionate (C)
N.D.
-0.0
-2.3
N.D.
N.D.
carbon source
Glycolic Acid (C)
N.D.
-0.2
-1.4
N.D.
N.D.
carbon source
Glycolic Acid (C)
N.D.
+0.3
-1.9
N.D.
N.D.
stress
Def Chloride 400 mM
N.D.
+1.2
-2.5
N.D.
N.D.
RCH2 grown on a colony of N2F3
N.D.
-0.6
-0.7
N.D.
N.D.
anaerobic
Nitrate/ lactate media with Nitrate 250mM
N.D.
-0.6
-0.5
N.D.
N.D.
RCH2 grown on a colony of N2F3
N.D.
-0.5
-0.4
N.D.
N.D.
stress
benzoic 0.4 mg/ml
N.D.
-0.7
+0.2
N.D.
N.D.
carbon source
propionate (C)
N.D.
+0.8
-1.3
N.D.
N.D.
nitrogen source
Putrescine (N)
N.D.
-0.6
+0.3
N.D.
N.D.
stress
Def Cephalothin 0.04 mg/ml
N.D.
+0.8
-1.2
N.D.
N.D.
stress
nitrate 200 mM
N.D.
-0.5
+0.3
N.D.
N.D.
stress
Def Benzethonium chloride 0.008 mM
N.D.
-0.5
+0.4
N.D.
N.D.
stress
Cephalothin 0.04 mg/ml
N.D.
-0.6
+0.5
N.D.
N.D.
nitrogen source
L-Alanine (N)
N.D.
+0.4
-0.5
N.D.
N.D.
nitrogen source
nitrite (N)
N.D.
+0.4
-0.4
N.D.
N.D.
stress
nitrate 250 mM
N.D.
-0.5
+0.5
N.D.
N.D.
stress
Def A22 0.015 mg/ml
N.D.
+0.6
-0.6
N.D.
N.D.
stress
Def Cephalothin 0.08 mg/ml
N.D.
+0.5
-0.4
N.D.
N.D.
stress
Def Carbenicillin 0.008 mg/ml
N.D.
-0.5
+0.6
N.D.
N.D.
stress
sodium fluoride 8.5 mM
N.D.
-0.4
+0.6
N.D.
N.D.
nitrogen source
nitrite (N)
N.D.
+0.7
-0.5
N.D.
N.D.
stress
Def Neomycin 0.0008 mg/ml
N.D.
+0.6
-0.3
N.D.
N.D.
lb
LB
N.D.
+0.6
+0.2
N.D.
N.D.
nitrogen source
L-Valine (N)
N.D.
+0.5
+0.4
N.D.
N.D.
stress
Lactate-nitrate; anaerobic; copper stress sample2
N.D.
+0.7
+0.2
N.D.
N.D.
stress
Benzethonium chloride 0.01 mM
N.D.
+0.8
+0.2
N.D.
N.D.
carbon source
D-Gluconic Acid (C)
N.D.
+0.7
+0.6
N.D.
N.D.
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