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Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_1537 and Psest_1538 are separated by 204 nucleotides
Psest_1538 and Psest_1539 are separated by 42 nucleotides
Psest_1539 and Psest_1540 are separated by 120 nucleotides
Psest_1540 and Psest_1541 overlap by 4 nucleotides
Psest_1537: Psest_1537 - Bacterioferritin-associated ferredoxin, at 1,637,121 to 1,637,339
_1537
Psest_1538: Psest_1538 - Uncharacterized protein conserved in bacteria, at 1,637,544 to 1,638,086
_1538
Psest_1539: Psest_1539 - Mn2+ and Fe2+ transporters of the NRAMP family, at 1,638,129 to 1,639,349
_1539
Psest_1540: Psest_1540 - biotin-dependent carboxylase uncharacterized domain, at 1,639,470 to 1,640,381
_1540
Psest_1541: Psest_1541 - TIGR00370 family protein, at 1,640,378 to 1,641,085
_1541
Group
Condition
Psest
_1537
Psest
_1538
Psest
_1539
Psest
_1540
Psest
_1541
RCH2 grown on a colony of N2F3
-0.4
+0.1
-3.4
-4.4
-2.9
RCH2 grown on a colony of N2F3
+0.2
+0.8
-2.1
-4.4
-3.1
lb
LB
-0.4
-0.9
-0.5
-5.8
-0.2
RCH2 grown on a colony of N2C3
-0.2
-0.2
-1.6
-1.1
-1.7
stress
Choline Lysine 20 mM
-0.1
+0.1
+0.1
-4.3
-0.5
stress
Polymyxin B sulfate 0.0001 mg/ml
-0.2
-0.0
-0.4
-2.8
-0.3
nitrogen source
L-Alanine (N)
-0.1
-0.0
-0.4
-2.0
-0.9
RCH2 grown on a colony of Serratia
+0.1
-0.6
-0.6
-1.3
-0.4
nitrogen source
Parabanic Acid (N)
+0.2
-0.1
+0.0
-2.8
-0.1
stress
nitrate 200 mM
-0.2
+0.6
-0.2
-2.4
-0.5
anaerobic
Nitrate/ lactate media with Nitrate 250mM
+0.1
+0.3
-0.3
-2.5
-0.1
stress
Benzethonium chloride 0.0125 mM
+0.3
+0.4
-0.4
-2.3
-0.6
stress
Fusidic 0.016 mg/ml
+0.2
+0.6
+0.0
-3.0
-0.3
anaerobic
Nitrate/ lactate media with Nitrate 20mM and .05mM Tungsten
+0.1
+0.2
+0.1
-2.7
+0.2
stress
A22 0.002 mg/ml
+0.1
+0.4
-0.2
-2.4
+0.1
stress
Vancomycin 0.016 mg/ml
-0.3
+0.6
+0.2
-2.2
-0.0
stress
Def Benzalkonium Chloride 0.002 mg/ml
+0.9
+0.1
-1.3
+0.2
-1.1
stress
Chlorate 75 mM
+0.6
-0.9
+0.3
-1.3
+0.1
stress
Gentamicin 0.0016 mg/ml
+1.2
-0.5
+0.1
-1.0
-0.3
stress
Def 2-Furfuraldehyde 0.032 vol%
+0.3
-0.5
-0.8
+1.2
-0.6
stress
Cephalothin 0.04 mg/ml
+1.5
-0.3
+0.2
-1.2
-0.0
stress
Nickel (II) chloride 0.8 mM
-0.4
+0.2
+0.8
-1.0
+0.9
stress
D-Cycloserine 0.032 mg/ml
+0.5
+0.9
+0.9
-0.4
-0.4
RCH2 grown on a colony of 8R2A
+0.4
+1.1
-0.4
+1.1
-0.6
carbon source
L-Glutamine (C)
-0.2
+0.0
+0.9
+1.4
+0.8
carbon source
L-Glutamine (C)
-0.2
+0.0
+0.9
+1.2
+0.9
stress
Vanillin 2 mM
-0.1
+0.2
+0.6
+0.9
+1.3
stress
Choline chloride 90 mM
-0.1
+0.0
-0.1
+2.5
+0.7
carbon source
L-Glutamine (C)
-0.3
-0.1
+1.0
+1.6
+0.8
carbon source
L-tyrosine (C)
-0.2
-0.3
+0.3
+4.2
+0.1
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