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Protein
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Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_1508 and Psest_1509 are separated by 244 nucleotides
Psest_1509 and Psest_1510 are separated by 41 nucleotides
Psest_1510 and Psest_1511 are separated by 110 nucleotides
Psest_1511 and Psest_1512 are separated by 21 nucleotides
Psest_1508: Psest_1508 - succinate CoA transferases, at 1,606,996 to 1,608,492
_1508
Psest_1509: Psest_1509 - quinolinate synthetase complex, A subunit, at 1,608,737 to 1,609,795
_1509
Psest_1510: Psest_1510 - Putative Zn-dependent protease, contains TPR repeats, at 1,609,837 to 1,611,267
_1510
Psest_1511: Psest_1511 - Predicted redox protein, regulator of disulfide bond formation, at 1,611,378 to 1,611,629
_1511
Psest_1512: Psest_1512 - Predicted permease, at 1,611,651 to 1,612,727
_1512
Group
Condition
Psest
_1508
Psest
_1509
Psest
_1510
Psest
_1511
Psest
_1512
carbon source
L-tyrosine (C)
-1.0
-5.1
-2.1
-2.7
-3.9
carbon source
L-tyrosine (C)
-0.9
-4.4
-2.6
-2.0
-2.7
stress
Def Cephalothin 0.04 mg/ml
-0.5
-4.4
-1.6
-2.6
-0.2
stress
Def Benzethonium chloride 0.008 mM
+0.5
-3.9
-4.9
-1.3
+0.5
stress
Def Fusidic 0.032 mg/ml
+0.1
-4.2
-3.3
-0.9
+0.2
stress
Def Carbenicillin 0.008 mg/ml
-0.0
-2.8
-3.7
-1.0
-0.1
stress
Def Fusidic 0.064 mg/ml
+0.1
-3.5
-3.3
-0.8
-0.1
stress
Def Vancomycin 0.016 mg/ml
-0.1
-3.3
-2.8
-0.7
-0.4
stress
Def Doxycycline hyclate 0.0002 mg/ml
+0.0
-5.0
-0.6
-1.3
+0.1
stress
Def Polymyxin B sulfate 0.00008 mg/ml
+0.1
-3.5
-1.6
-1.3
+0.1
stress
Def Polymyxin B sulfate 0.0001 mg/ml
+0.3
-3.4
-1.9
-1.4
+0.1
stress
Def Carbenicillin 0.02 mg/ml
-0.3
-1.9
-2.7
-1.0
-0.3
stress
Furfuryl Alcohol 0.05 vol%
+0.0
-1.5
-4.2
-0.2
-0.3
stress
Def Vancomycin 0.008 mg/ml
+0.0
-3.4
-1.4
-1.3
+0.1
stress
Def methylglyoxal 0.01 vol%
+0.0
-3.7
-0.5
-1.6
-0.2
stress
Def Neomycin 0.0008 mg/ml
-0.1
-3.3
+0.2
-2.4
-0.1
vitamin
No vitamins t2
-0.0
-4.1
-0.2
-1.3
-0.1
stress
Def Cisplatin 0.0002 mg/ml
+0.3
-4.7
+0.3
-1.2
-0.0
stress
nitrate 200 mM
+0.5
-3.2
-1.1
-0.7
-0.7
stress
Def Benzalkonium Chloride 0.002 mg/ml
+1.2
-4.0
-2.3
-0.2
+0.1
carbon source
RCH2 defined media
-0.0
-4.4
+0.4
-1.2
-0.0
stress
methylglyoxal 0.0016 vol%
+0.3
-1.8
-3.5
+0.1
-0.1
stress
Def Neomycin 0.0002 mg/ml
+0.2
-4.1
+0.4
-1.1
-0.0
stress
Def Chloride 400 mM
+0.2
-4.4
+0.7
-1.3
+0.1
carbon source
RCH2 defined media
+0.4
-3.9
-0.2
-0.9
+0.3
stress
Def 2-Furfuraldehyde 0.032 vol%
+0.6
-3.0
-0.5
-1.2
+0.7
stress
Fusidic 0.016 mg/ml
+0.6
+0.3
-4.2
+0.4
+0.3
stress
Def Chlorate 20 mM
+0.5
-3.3
+0.7
+1.4
+0.4
stress
Chlorate 75 mM
-0.2
-2.2
-1.8
+6.6
-0.7
carbon source
propionate (C)
+1.5
-2.1
+1.7
+0.2
+0.9
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