Fitness for 5 genes in Pseudomonas stutzeri RCH2

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500 ntPsest_1485 and Psest_1486 are separated by 5 nucleotidesPsest_1486 and Psest_1487 are separated by 9 nucleotidesPsest_1487 and Psest_1488 are separated by 160 nucleotidesPsest_1488 and Psest_1489 are separated by 431 nucleotides Psest_1485: Psest_1485 - Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains), at 1,587,268 to 1,587,840 _1485 Psest_1486: Psest_1486 - hypothetical protein, at 1,587,846 to 1,588,778 _1486 Psest_1487: Psest_1487 - prolyl-tRNA synthetase, family II, at 1,588,788 to 1,590,503 _1487 Psest_1488: Psest_1488 - outer membrane porin, OprD family., at 1,590,664 to 1,591,920 _1488 Psest_1489: Psest_1489 - Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases, at 1,592,352 to 1,592,777 _1489
Group Condition Psest_1485 Psest_1486 Psest_1487 Psest_1488 Psest_1489
carbon source L-Proline (C) -0.3 -2.0 N.D. -0.8 -1.5
stress Choline chloride 90 mM -0.2 -3.6 N.D. -0.0 -0.6
stress Furfuryl Alcohol 0.05 vol% +0.0 -1.8 N.D. -0.6 -1.9
stress Polymyxin B sulfate 0.0001 mg/ml -0.1 -1.9 N.D. -0.5 -1.6
carbon source L-Proline (C) +0.2 -1.8 N.D. -0.5 -1.8
carbon source L-Proline (C) -0.0 -1.8 N.D. -0.4 -1.4
stress Choline chloride 90 mM -0.1 -2.9 N.D. -0.1 -0.4
nitrogen source Parabanic Acid (N) -0.2 -0.9 N.D. -2.4 +0.3
carbon source L-Glutamine (C) +0.2 -1.7 N.D. -0.6 -1.2
stress Def Carbenicillin 0.02 mg/ml -0.9 -0.9 N.D. -0.8 -0.6
temperature LB 30C timecourse1 timepoint 3 -0.3 -1.4 N.D. -0.7 -0.7
stress Nalidixic 0.001 mg/ml -0.4 -1.8 N.D. -0.9 +0.2
stress Paraquat dichloride 0.015 mg/ml +0.2 -1.6 N.D. -0.3 -1.1
stress Def Carbenicillin 0.008 mg/ml -0.6 -1.2 N.D. -1.4 +0.5
RCH2 grown on a colony of N2F3 -0.9 -2.1 N.D. +0.1 +0.3
stress Bacitracin 0.25 mg/ml -0.1 -1.7 N.D. -1.7 +0.8
stress Fusidic 0.016 mg/ml -0.2 -2.1 N.D. -0.9 +0.6
nitrogen source Adenine (N) +0.3 -0.7 N.D. -1.8 -0.3
carbon source L-Glutamine (C) +0.3 -1.5 N.D. -0.5 -0.7
stress Cephalothin 0.04 mg/ml -0.2 -2.3 N.D. -1.5 +1.7
stress 1-ethyl-3-methylimidazolium acetate 40 mM +0.2 -2.8 N.D. -0.0 +0.6
stress Choline Lysine 20 mM +0.4 -2.7 N.D. +0.4 +0.2
stress nitrite 2.5 mM +0.9 -1.2 N.D. -0.5 -0.8
nitrogen source L-Glutamic (N) +0.2 -1.5 N.D. -0.9 +0.6
stress Bacitracin 0.25 mg/ml +0.3 -1.2 N.D. -1.3 +1.6
stress Choline Lysine 20 mM -0.4 -1.8 N.D. +0.3 +1.4
carbon source L-tyrosine (C) +0.5 +0.4 N.D. -0.8 +1.3
stress Def Benzalkonium Chloride 0.002 mg/ml +0.8 -0.7 N.D. +0.1 +1.6
stress Def 2-Furfuraldehyde 0.032 vol% +0.7 +0.7 N.D. -1.4 +1.9
stress Def Vancomycin 0.016 mg/ml -0.1 +2.2 N.D. -1.0 +0.8
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