Fitness for 5 genes in Pseudomonas stutzeri RCH2

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500 ntPsest_1484 and Psest_1485 are separated by 10 nucleotidesPsest_1485 and Psest_1486 are separated by 5 nucleotidesPsest_1486 and Psest_1487 are separated by 9 nucleotidesPsest_1487 and Psest_1488 are separated by 160 nucleotides Psest_1484: Psest_1484 - Thiol-disulfide isomerase and thioredoxins, at 1,586,799 to 1,587,257 _1484 Psest_1485: Psest_1485 - Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains), at 1,587,268 to 1,587,840 _1485 Psest_1486: Psest_1486 - hypothetical protein, at 1,587,846 to 1,588,778 _1486 Psest_1487: Psest_1487 - prolyl-tRNA synthetase, family II, at 1,588,788 to 1,590,503 _1487 Psest_1488: Psest_1488 - outer membrane porin, OprD family., at 1,590,664 to 1,591,920 _1488
Group Condition Psest_1484 Psest_1485 Psest_1486 Psest_1487 Psest_1488
stress Cephalothin 0.04 mg/ml -0.3 -0.2 -2.3 N.D. -1.5
stress Def Carbenicillin 0.008 mg/ml -1.0 -0.6 -1.2 N.D. -1.4
nitrogen source Parabanic Acid (N) -0.1 -0.2 -0.9 N.D. -2.4
carbon source L-Proline (C) -0.2 -0.3 -2.0 N.D. -0.8
stress Nickel (II) chloride 0.8 mM -1.3 -0.0 -1.6 N.D. -0.4
stress Def Carbenicillin 0.02 mg/ml -0.6 -0.9 -0.9 N.D. -0.8
stress Nalidixic 0.001 mg/ml -0.1 -0.4 -1.8 N.D. -0.9
temperature LB 30C timecourse1 timepoint 3 -0.7 -0.3 -1.4 N.D. -0.7
stress Cobalt chloride 0.08 mM -1.6 -0.0 -0.8 N.D. -0.4
stress Def Chlorate 20 mM -2.0 +0.6 -0.8 N.D. -0.5
stress Bacitracin 0.25 mg/ml +0.7 -0.1 -1.7 N.D. -1.7
stress Def Chlorate 40 mM -2.6 +0.3 +0.6 N.D. -1.0
stress 1-ethyl-3-methylimidazolium acetate 40 mM -0.1 +0.2 -2.8 N.D. -0.0
stress Fusidic 0.016 mg/ml +0.6 -0.2 -2.1 N.D. -0.9
nitrogen source L-Glutamic (N) -0.4 +0.2 -1.5 N.D. -0.9
stress Choline chloride 90 mM +1.5 -0.2 -3.6 N.D. -0.0
nitrogen source Adenine (N) +0.0 +0.3 -0.7 N.D. -1.8
RCH2 grown on a colony of N2F3 +0.8 -0.9 -2.1 N.D. +0.1
stress nitrite 2.5 mM -0.9 +0.9 -1.2 N.D. -0.5
stress Bacitracin 0.25 mg/ml +0.6 +0.3 -1.2 N.D. -1.3
stress Choline chloride 90 mM +1.6 -0.1 -2.9 N.D. -0.1
stress Gentamicin 0.0016 mg/ml +1.3 -0.4 -1.0 N.D. -1.0
stress Choline Lysine 20 mM +1.4 +0.4 -2.7 N.D. +0.4
stress Choline Lysine 20 mM +1.5 -0.4 -1.8 N.D. +0.3
stress Def Vancomycin 0.016 mg/ml +0.4 -0.1 +2.2 N.D. -1.0
stress Def Benzalkonium Chloride 0.002 mg/ml +1.5 +0.8 -0.7 N.D. +0.1
stress Def 2-Furfuraldehyde 0.032 vol% +1.7 +0.7 +0.7 N.D. -1.4
stress L-Lysine 200 mM +2.0 +0.4 +0.4 N.D. +0.4
stress Neomycin 0.004 mg/ml +0.7 +0.1 +1.6 N.D. +0.7
stress Neomycin 0.004 mg/ml +0.9 +0.5 +0.9 N.D. +0.9
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