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Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_1484 and Psest_1485 are separated by 10 nucleotides
Psest_1485 and Psest_1486 are separated by 5 nucleotides
Psest_1486 and Psest_1487 are separated by 9 nucleotides
Psest_1487 and Psest_1488 are separated by 160 nucleotides
Psest_1484: Psest_1484 - Thiol-disulfide isomerase and thioredoxins, at 1,586,799 to 1,587,257
_1484
Psest_1485: Psest_1485 - Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains), at 1,587,268 to 1,587,840
_1485
Psest_1486: Psest_1486 - hypothetical protein, at 1,587,846 to 1,588,778
_1486
Psest_1487: Psest_1487 - prolyl-tRNA synthetase, family II, at 1,588,788 to 1,590,503
_1487
Psest_1488: Psest_1488 - outer membrane porin, OprD family., at 1,590,664 to 1,591,920
_1488
Group
Condition
Psest
_1484
Psest
_1485
Psest
_1486
Psest
_1487
Psest
_1488
stress
Cephalothin 0.04 mg/ml
-0.3
-0.2
-2.3
N.D.
-1.5
stress
Def Carbenicillin 0.008 mg/ml
-1.0
-0.6
-1.2
N.D.
-1.4
nitrogen source
Parabanic Acid (N)
-0.1
-0.2
-0.9
N.D.
-2.4
carbon source
L-Proline (C)
-0.2
-0.3
-2.0
N.D.
-0.8
stress
Nickel (II) chloride 0.8 mM
-1.3
-0.0
-1.6
N.D.
-0.4
stress
Def Carbenicillin 0.02 mg/ml
-0.6
-0.9
-0.9
N.D.
-0.8
stress
Nalidixic 0.001 mg/ml
-0.1
-0.4
-1.8
N.D.
-0.9
temperature
LB 30C timecourse1 timepoint 3
-0.7
-0.3
-1.4
N.D.
-0.7
stress
Cobalt chloride 0.08 mM
-1.6
-0.0
-0.8
N.D.
-0.4
stress
Def Chlorate 20 mM
-2.0
+0.6
-0.8
N.D.
-0.5
stress
Bacitracin 0.25 mg/ml
+0.7
-0.1
-1.7
N.D.
-1.7
stress
Def Chlorate 40 mM
-2.6
+0.3
+0.6
N.D.
-1.0
stress
1-ethyl-3-methylimidazolium acetate 40 mM
-0.1
+0.2
-2.8
N.D.
-0.0
stress
Fusidic 0.016 mg/ml
+0.6
-0.2
-2.1
N.D.
-0.9
nitrogen source
L-Glutamic (N)
-0.4
+0.2
-1.5
N.D.
-0.9
stress
Choline chloride 90 mM
+1.5
-0.2
-3.6
N.D.
-0.0
nitrogen source
Adenine (N)
+0.0
+0.3
-0.7
N.D.
-1.8
RCH2 grown on a colony of N2F3
+0.8
-0.9
-2.1
N.D.
+0.1
stress
nitrite 2.5 mM
-0.9
+0.9
-1.2
N.D.
-0.5
stress
Bacitracin 0.25 mg/ml
+0.6
+0.3
-1.2
N.D.
-1.3
stress
Choline chloride 90 mM
+1.6
-0.1
-2.9
N.D.
-0.1
stress
Gentamicin 0.0016 mg/ml
+1.3
-0.4
-1.0
N.D.
-1.0
stress
Choline Lysine 20 mM
+1.4
+0.4
-2.7
N.D.
+0.4
stress
Choline Lysine 20 mM
+1.5
-0.4
-1.8
N.D.
+0.3
stress
Def Vancomycin 0.016 mg/ml
+0.4
-0.1
+2.2
N.D.
-1.0
stress
Def Benzalkonium Chloride 0.002 mg/ml
+1.5
+0.8
-0.7
N.D.
+0.1
stress
Def 2-Furfuraldehyde 0.032 vol%
+1.7
+0.7
+0.7
N.D.
-1.4
stress
L-Lysine 200 mM
+2.0
+0.4
+0.4
N.D.
+0.4
stress
Neomycin 0.004 mg/ml
+0.7
+0.1
+1.6
N.D.
+0.7
stress
Neomycin 0.004 mg/ml
+0.9
+0.5
+0.9
N.D.
+0.9
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