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Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_1476 and Psest_1477 overlap by 4 nucleotides
Psest_1477 and Psest_1478 are separated by 50 nucleotides
Psest_1478 and Psest_1479 overlap by 8 nucleotides
Psest_1479 and Psest_1480 overlap by 4 nucleotides
Psest_1476: Psest_1476 - Predicted permease, at 1,581,244 to 1,582,341
_1476
Psest_1477: Psest_1477 - DnaA regulatory inactivator Hda, at 1,582,338 to 1,583,042
_1477
Psest_1478: Psest_1478 - Predicted membrane protein, at 1,583,093 to 1,583,503
_1478
Psest_1479: Psest_1479 - NAD(P)H:quinone oxidoreductase, type IV, at 1,583,496 to 1,584,101
_1479
Psest_1480: Psest_1480 - arsenate reductase (glutaredoxin), at 1,584,098 to 1,584,484
_1480
Group
Condition
Psest
_1476
Psest
_1477
Psest
_1478
Psest
_1479
Psest
_1480
stress
Chlorate 75 mM
-0.4
N.D.
-1.2
+0.1
-2.4
stress
Def Carbenicillin 0.02 mg/ml
-0.4
N.D.
-0.6
-1.3
-0.6
stress
Def Cephalothin 0.04 mg/ml
-0.2
N.D.
-0.3
-1.2
-1.2
temperature
LB 30C timecourse1 timepoint 3
-0.6
N.D.
-0.6
-0.7
-0.9
stress
Nalidixic 0.00390625 mg/ml
-0.9
N.D.
-0.6
-0.5
-0.7
RCH2 grown on a colony of N2A2
-0.3
N.D.
+0.0
-0.6
-1.4
lb
LB
+0.0
N.D.
-0.5
-0.5
-1.3
RCH2 grown on a colony of 8R2A
+0.4
N.D.
-0.7
-1.1
-0.8
stress
Nickel (II) chloride 0.8 mM
-0.4
N.D.
-0.2
-0.7
-0.9
carbon source
L-tyrosine (C)
-0.6
N.D.
+0.1
-1.9
+0.4
carbon source
L-Lactate (C)
+0.2
N.D.
-0.2
-1.4
-0.6
vitamin
With vitamins t2
-0.1
N.D.
+0.2
-0.5
-1.7
stress
Gentamicin 0.0016 mg/ml
-0.1
N.D.
+0.5
-2.4
-0.0
stress
Fusidic 0.016 mg/ml
-0.3
N.D.
-0.1
+0.1
-1.7
stress
Benzethonium chloride 0.0125 mM
-0.8
N.D.
-0.5
+0.4
-1.1
stress
Def Chloride 400 mM
-1.9
N.D.
-0.1
-0.4
+0.7
stress
Benzethonium chloride 0.01 mM
-0.9
N.D.
-0.2
-0.9
+0.6
RCH2 grown on a colony of Serratia
-0.1
N.D.
+0.6
-0.4
-1.2
stress
Cobalt chloride 0.07 mM
+0.2
N.D.
-0.7
-1.0
+0.4
stress
Phosphomycin 0.012 mg/ml
+0.1
N.D.
+0.3
+0.2
-1.7
stress
Spectinomycin 0.00625 mg/ml
-1.4
N.D.
+0.1
+0.9
-0.6
stress
Choline Lysine 20 mM
-0.7
N.D.
+0.3
-1.0
+0.4
stress
Choline chloride 90 mM
-0.3
N.D.
+0.7
-0.6
-0.6
stress
1-ethyl-3-methylimidazolium acetate 40 mM
-0.2
N.D.
-0.3
-0.9
+0.8
anaerobic
Nitrate/ lactate media with Nitrate 250mM
+0.0
N.D.
+0.2
-1.6
+0.9
carbon source
L-tyrosine (C)
-0.0
N.D.
+0.7
-1.6
+0.6
stress
Def 2-Furfuraldehyde 0.032 vol%
+1.0
N.D.
+1.1
-0.3
-0.6
stress
L-Lysine 200 mM
-0.5
N.D.
+0.5
+0.4
+0.8
anaerobic
nitrate reduction - anaerobic
+0.6
N.D.
+1.1
-0.2
+0.7
stress
Def Benzalkonium Chloride 0.002 mg/ml
+1.2
N.D.
+1.4
+0.1
+0.3
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