Fitness for 5 genes in Pseudomonas stutzeri RCH2

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500 ntPsest_1451 and Psest_1452 are separated by 160 nucleotidesPsest_1452 and Psest_1453 are separated by 48 nucleotidesPsest_1453 and Psest_1454 are separated by 72 nucleotidesPsest_1454 and Psest_1455 are separated by 126 nucleotides Psest_1451: Psest_1451 - Uncharacterized ABC-type transport system, permease components, at 1,559,451 to 1,560,041 _1451 Psest_1452: Psest_1452 - 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase, at 1,560,202 to 1,562,511 _1452 Psest_1453: Psest_1453 - Glycerol-3-phosphate dehydrogenase, at 1,562,560 to 1,564,104 _1453 Psest_1454: Psest_1454 - ybaK/ebsC protein, at 1,564,177 to 1,564,647 _1454 Psest_1455: Psest_1455 - diguanylate cyclase (GGDEF) domain, at 1,564,774 to 1,565,862 _1455
Group Condition Psest_1451 Psest_1452 Psest_1453 Psest_1454 Psest_1455
stress Def methylglyoxal 0.01 vol% +0.0 -5.2 -0.0 +0.0 +0.1
nitrogen source L-Glutamic (N) -1.0 -3.8 -0.3 -0.1 +0.2
carbon source RCH2 defined media -0.5 -4.5 -0.2 +0.0 +0.4
stress Def Benzethonium chloride 0.008 mM -0.2 -5.0 -0.3 +0.2 +0.5
temperature Glucose defined media 37C sample1 -0.8 -3.9 -0.1 +0.1 +0.0
stress Def Tetracycline 0.0004 mg/ml -0.4 -3.8 -0.2 -0.2 -0.1
carbon source RCH2 defined media -0.6 -4.0 -0.1 +0.2 +0.1
nitrogen source nitrite (N) -1.3 -3.2 -0.3 -0.4 +0.6
carbon source Glucose defined media -0.2 -3.9 -0.3 +0.1 -0.1
stress Def Nalidixic 0.0005 mg/ml -0.3 -4.2 +0.1 +0.1 +0.0
stress Def Fusidic 0.064 mg/ml +0.1 -4.1 -0.2 -0.3 +0.3
temperature Glucose defined 30C timecourse1 timepoint 3 +0.0 -4.1 -0.4 +0.1 +0.1
nitrogen source L-Proline (N) +0.4 -4.6 +0.2 -0.1 +0.0
carbon source RCH2 defined media -0.5 -3.8 -0.0 +0.2 +0.1
stress Def Doxycycline hyclate 0.0002 mg/ml +0.2 -4.1 +0.0 -0.2 +0.2
stress Def Polymyxin B sulfate 0.00008 mg/ml -0.8 -3.8 -0.0 +0.2 +0.4
carbon source L-Lactate (C) +0.0 -4.1 -0.2 -0.2 +0.4
stress Def Thallium(I) acetate 0.125 mg/ml -0.6 -3.3 -0.5 +0.2 +0.3
stress Def Neomycin 0.0008 mg/ml -0.4 -3.4 -0.3 +0.3 +0.3
stress Def Polymyxin B sulfate 0.0001 mg/ml -0.1 -3.9 -0.2 +0.2 +0.5
stress Def Benzalkonium Chloride 0.002 mg/ml -0.5 -3.5 -0.3 +0.3 +0.4
nitrogen source L-Glutamine (N) +0.3 -4.4 +0.1 +0.3 +0.3
nitrogen source L-Alanine (N) +0.2 -4.2 +0.4 +0.0 +0.2
stress Def Vancomycin 0.008 mg/ml +0.5 -3.9 -0.0 -0.1 +0.1
nitrogen source D-Alanine (N) +0.6 -4.2 +0.2 +0.2 +0.2
nitrogen source L-Isoleucine (N) -1.2 -2.2 -0.4 +0.6 +0.3
nitrogen source nitrate (N) +0.4 -3.9 +0.3 +0.1 +0.3
carbon source butyrate (C) +0.1 -3.1 -0.6 +0.7 +0.3
vitamin No vitamins t1 +0.9 -3.4 +0.2 -0.0 -0.0
vitamin No vitamins t2 +0.9 -3.5 +0.3 +0.0 +0.1
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