Fitness for 5 genes in Pseudomonas stutzeri RCH2

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500 ntPsest_1390 and Psest_1391 are separated by 65 nucleotidesPsest_1391 and Psest_1392 are separated by 12 nucleotidesPsest_1392 and Psest_1393 are separated by 250 nucleotidesPsest_1393 and Psest_1394 are separated by 1 nucleotides Psest_1390: Psest_1390 - Uncharacterized ABC-type transport system, permease component, at 1,498,524 to 1,499,450 _1390 Psest_1391: Psest_1391 - ABC-type uncharacterized transport system, permease component, at 1,499,516 to 1,500,622 _1391 Psest_1392: Psest_1392 - ABC-type uncharacterized transport systems, ATPase components, at 1,500,635 to 1,502,191 _1392 Psest_1393: Psest_1393 - AraC-type DNA-binding domain-containing proteins, at 1,502,442 to 1,503,362 _1393 Psest_1394: Psest_1394 - Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit, at 1,503,364 to 1,503,804 _1394
Group Condition Psest_1390 Psest_1391 Psest_1392 Psest_1393 Psest_1394
RCH2 grown on a colony of N2C3 -1.2 -1.4 -2.0 -0.4 -0.4
RCH2 grown on a colony of N2F3 -0.6 -1.2 -2.2 -0.5 -0.2
stress Polymyxin B sulfate 0.0001 mg/ml -1.0 -1.2 -0.3 -0.2 -0.5
RCH2 grown on a colony of N2F3 -1.0 -0.7 -0.6 -0.1 -0.4
nitrogen source L-Isoleucine (N) -0.3 -0.6 -0.0 -0.6 -0.8
nitrogen source Cytosine (N) -0.7 -0.6 -0.2 -0.1 -0.5
stress Spectinomycin 0.00625 mg/ml -0.9 +0.3 -0.5 -0.0 +0.2
temperature LB 26C sample1 +0.8 -0.2 -1.1 -0.1 -0.1
stress syringaldehyde 3 mM -0.1 -0.6 -0.9 +0.7 +0.2
stress Def Chlorate 20 mM +0.9 -0.4 -0.6 +0.1 -0.5
stress Def 2-Furfuraldehyde 0.032 vol% -0.5 -0.1 -1.0 +1.2 +0.1
carbon source propionate (C) +0.2 +0.6 -1.5 +0.7 -0.2
temperature LB 30C timecourse2 timepoint 1 +0.5 -0.6 -0.8 +0.4 +0.2
stress acetate 80 mM -0.6 -0.5 +0.4 -0.1 +0.5
nutrient Min media with glucose -0.6 -0.4 -0.1 +0.2 +0.8
stress Cisplatin 0.003 mg/ml +0.6 +0.5 -0.2 -0.2 -0.5
stress syringaldehyde 4 mM -0.5 +0.4 -0.4 +0.9 -0.1
stress nitrate 250 mM -0.4 -0.0 -0.4 +0.3 +1.0
stress Cephalothin 0.04 mg/ml -0.5 -0.2 +0.3 +0.3 +0.8
RCH2 grown on a colony of Pseudomonas migulae strain N1B4 +1.2 +0.2 -0.3 -0.0 -0.4
RCH2 grown on a colony of Serratia +1.0 -0.8 +0.3 +0.2 +0.3
stress Furfuryl Alcohol 0.05 vol% +0.1 +0.5 +1.0 +0.3 -0.8
stress nitrite 2.5 mM +0.2 +1.0 +0.6 +0.1 -0.4
stress D-Cycloserine 0.032 mg/ml +0.8 +0.6 +0.2 +0.2 -0.3
temperature LB 30C timecourse2 timepoint 2 +0.2 +0.4 +0.7 -0.2 +0.6
stress Vanillin 2 mM +1.0 +0.4 +0.1 +0.9 -0.4
lb LB +0.7 +0.2 -0.2 +0.6 +0.6
stress Chlorate 75 mM +0.7 +0.8 +0.4 +0.4 +0.4
stress Def Carbenicillin 0.008 mg/ml +0.2 +0.5 +1.0 +0.2 +1.3
stress Def Carbenicillin 0.02 mg/ml +0.9 +0.8 +0.8 +0.8 +0.1
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