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Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_1389 and Psest_1390 are separated by 17 nucleotides
Psest_1390 and Psest_1391 are separated by 65 nucleotides
Psest_1391 and Psest_1392 are separated by 12 nucleotides
Psest_1392 and Psest_1393 are separated by 250 nucleotides
Psest_1389: Psest_1389 - hypothetical protein, at 1,497,898 to 1,498,506
_1389
Psest_1390: Psest_1390 - Uncharacterized ABC-type transport system, permease component, at 1,498,524 to 1,499,450
_1390
Psest_1391: Psest_1391 - ABC-type uncharacterized transport system, permease component, at 1,499,516 to 1,500,622
_1391
Psest_1392: Psest_1392 - ABC-type uncharacterized transport systems, ATPase components, at 1,500,635 to 1,502,191
_1392
Psest_1393: Psest_1393 - AraC-type DNA-binding domain-containing proteins, at 1,502,442 to 1,503,362
_1393
Group
Condition
Psest
_1389
Psest
_1390
Psest
_1391
Psest
_1392
Psest
_1393
RCH2 grown on a colony of N2C3
+0.3
-1.2
-1.4
-2.0
-0.4
RCH2 grown on a colony of N2F3
+0.6
-0.6
-1.2
-2.2
-0.5
stress
Polymyxin B sulfate 0.0001 mg/ml
-0.3
-1.0
-1.2
-0.3
-0.2
RCH2 grown on a colony of N2F3
-0.3
-1.0
-0.7
-0.6
-0.1
nitrogen source
L-Isoleucine (N)
-0.8
-0.3
-0.6
-0.0
-0.6
vitamin
With vitamins t1
-0.7
-0.6
-0.4
-0.5
+0.2
stress
syringaldehyde 3 mM
-0.5
-0.1
-0.6
-0.9
+0.7
nitrogen source
Cytosine (N)
+0.4
-0.7
-0.6
-0.2
-0.1
stress
Spectinomycin 0.00625 mg/ml
+0.3
-0.9
+0.3
-0.5
-0.0
carbon source
propionate (C)
-0.5
+0.2
+0.6
-1.5
+0.7
nitrogen source
nitrite (N)
+0.9
-0.9
-0.1
+0.0
-0.4
temperature
LB 26C sample1
+0.3
+0.8
-0.2
-1.1
-0.1
temperature
LB 30C timecourse2 timepoint 1
+0.2
+0.5
-0.6
-0.8
+0.4
stress
Def Chlorate 20 mM
+0.0
+0.9
-0.4
-0.6
+0.1
RCH2 grown on a colony of Serratia
-0.6
+1.0
-0.8
+0.3
+0.2
stress
syringaldehyde 4 mM
-0.2
-0.5
+0.4
-0.4
+0.9
stress
Def 2-Furfuraldehyde 0.032 vol%
+0.8
-0.5
-0.1
-1.0
+1.2
stress
nitrate 250 mM
+0.9
-0.4
-0.0
-0.4
+0.3
stress
Cephalothin 0.04 mg/ml
+0.9
-0.5
-0.2
+0.3
+0.3
RCH2 grown on a colony of Pseudomonas migulae strain N1B4
+0.2
+1.2
+0.2
-0.3
-0.0
stress
D-Cycloserine 0.032 mg/ml
-0.4
+0.8
+0.6
+0.2
+0.2
stress
syringaldehyde 4 mM
+0.4
+0.5
+0.0
-0.1
+1.0
temperature
LB 30C timecourse1 timepoint 2
+0.7
+0.4
+0.7
-0.2
+0.2
stress
Furfuryl Alcohol 0.05 vol%
-0.1
+0.1
+0.5
+1.0
+0.3
stress
Lactate-nitrate; anaerobic; cobalt stress sample2
+0.2
+0.9
+0.2
+0.6
+0.0
stress
perchlorate 25 mM
+0.3
+0.6
+0.5
+0.1
+0.4
stress
Vanillin 2 mM
+0.9
+1.0
+0.4
+0.1
+0.9
stress
Def Carbenicillin 0.008 mg/ml
+1.5
+0.2
+0.5
+1.0
+0.2
stress
Def Carbenicillin 0.02 mg/ml
+0.5
+0.9
+0.8
+0.8
+0.8
stress
Chlorate 75 mM
+1.5
+0.7
+0.8
+0.4
+0.4
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