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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_1376 and Psest_1377 are separated by 68 nucleotides
Psest_1377 and Psest_1378 are separated by 12 nucleotides
Psest_1378 and Psest_1379 are separated by 58 nucleotides
Psest_1379 and Psest_1380 are separated by 214 nucleotides
Psest_1376: Psest_1376 - hypothetical protein, at 1,486,658 to 1,487,008
_1376
Psest_1377: Psest_1377 - hypothetical protein, at 1,487,077 to 1,487,757
_1377
Psest_1378: Psest_1378 - hypothetical protein, at 1,487,770 to 1,488,501
_1378
Psest_1379: Psest_1379 - hypothetical protein, at 1,488,560 to 1,488,916
_1379
Psest_1380: Psest_1380 - Di- and tricarboxylate transporters, at 1,489,131 to 1,490,978
_1380
Group
Condition
Psest
_1376
Psest
_1377
Psest
_1378
Psest
_1379
Psest
_1380
carbon source
L-tyrosine (C)
+0.1
-1.1
+0.0
N.D.
-0.9
nutrient
L-Histidine
-0.1
-1.2
+0.0
N.D.
+0.3
nitrogen source
Parabanic Acid (N)
+0.4
-0.6
-0.6
N.D.
+0.3
stress
Nalidixic 0.00390625 mg/ml
-0.1
+0.5
+0.4
N.D.
-1.2
RCH2 grown on a colony of N2A2
+0.8
-0.6
-0.3
N.D.
-0.1
stress
Def Benzalkonium Chloride 0.002 mg/ml
+0.2
+0.6
-0.9
N.D.
+0.3
stress
Def Carbenicillin 0.008 mg/ml
+0.8
+0.3
-1.1
N.D.
+0.5
RCH2 grown on a colony of 8R2A
+0.3
+0.6
+0.4
N.D.
-0.5
stress
Cephalothin 0.04 mg/ml
+0.7
+0.7
-1.1
N.D.
+0.4
stress
Furfuryl Alcohol 0.05 vol%
-0.8
+0.4
+1.2
N.D.
+0.1
stress
Def Benzethonium chloride 0.008 mM
+0.8
+0.4
-0.5
N.D.
+0.4
stress
Nickel (II) chloride 0.9 mM
-0.5
+0.7
+0.9
N.D.
+0.1
stress
Def 2-Furfuraldehyde 0.032 vol%
+0.8
+0.7
-0.5
N.D.
+0.4
anaerobic
nitrate reduction - anaerobic
+0.6
+0.8
-0.3
N.D.
+0.3
stress
Nickel (II) chloride 0.9 mM
-0.7
+0.9
+1.3
N.D.
+0.0
stress
Nickel (II) chloride 0.8 mM
-0.4
+0.7
+1.0
N.D.
+0.2
stress
Def Neomycin 0.0008 mg/ml
+0.4
+0.7
+0.5
N.D.
+0.2
stress
Nickel (II) chloride 1 mM
-0.1
+0.8
+1.1
N.D.
+0.0
stress
nitrate 250 mM
+1.0
+0.8
-0.3
N.D.
+0.7
stress
Chlorate 75 mM
-0.5
+1.9
+0.8
N.D.
+0.3
stress
Nickel (II) chloride 0.8 mM
-0.4
+1.3
+1.5
N.D.
+0.3
stress
Cobalt chloride 0.08 mM
-0.3
+1.7
+1.7
N.D.
+0.2
stress
Nickel (II) chloride 1 mM
-0.1
+1.4
+1.7
N.D.
+0.4
stress
Cobalt chloride 0.05 mM
-0.2
+1.8
+1.8
N.D.
+0.0
stress
Cobalt chloride 0.08 mM
-0.1
+1.4
+2.3
N.D.
+0.1
stress
Cobalt chloride 0.07 mM
-0.3
+1.8
+2.3
N.D.
+0.1
stress
Cobalt chloride 0.06 mM
-0.1
+1.7
+2.3
N.D.
+0.3
stress
Cobalt chloride 0.05 mM
-0.4
+2.5
+2.2
N.D.
+0.4
stress
Cobalt chloride 0.07 mM
-0.4
+2.3
+2.4
N.D.
+0.5
stress
Cobalt chloride 0.06 mM
-0.6
+3.2
+3.9
N.D.
+0.3
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