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Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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Number of genes on each side:
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500 nt
Psest_1362 and Psest_1363 are separated by 7 nucleotides
Psest_1363 and Psest_1364 are separated by 281 nucleotides
Psest_1364 and Psest_1365 are separated by 144 nucleotides
Psest_1365 and Psest_1366 are separated by 221 nucleotides
Psest_1362: Psest_1362 - ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component, at 1,471,904 to 1,472,548
_1362
Psest_1363: Psest_1363 - Predicted membrane protein, at 1,472,556 to 1,473,821
_1363
Psest_1364: Psest_1364 - hypothetical protein, at 1,474,103 to 1,474,504
_1364
Psest_1365: Psest_1365 - Methyl-accepting chemotaxis protein, at 1,474,649 to 1,476,628
_1365
Psest_1366: Psest_1366 - hypothetical protein, at 1,476,850 to 1,477,059
_1366
Group
Condition
Psest
_1362
Psest
_1363
Psest
_1364
Psest
_1365
Psest
_1366
RCH2 grown on a colony of Serratia
N.D.
+0.2
-0.4
+0.3
-5.1
temperature
LB 30C timecourse1 timepoint 1
N.D.
+0.0
-0.0
+0.2
-4.4
stress
Def Carbenicillin 0.02 mg/ml
N.D.
+0.9
+0.7
+0.2
-5.2
stress
Benzethonium chloride 0.01 mM
N.D.
-0.3
+0.5
-0.4
-2.5
stress
D-Cycloserine 0.032 mg/ml
N.D.
+0.3
-0.3
-0.0
-2.6
stress
Nalidixic 0.00390625 mg/ml
N.D.
+0.1
-0.0
+0.2
-2.9
RCH2 grown on a colony of N2F3
N.D.
-1.0
-0.4
-0.4
-0.7
stress
Bacitracin 0.25 mg/ml
N.D.
-0.6
-0.2
-0.1
-1.5
nitrogen source
L-Glutamic (N)
N.D.
-0.1
-0.0
-0.0
-2.1
RCH2 grown on a colony of 8R2A
N.D.
+0.3
-0.1
-0.1
-2.0
stress
A22 0.005 mg/ml
N.D.
-0.5
+0.2
+0.0
-1.4
anaerobic
Nitrite/ lactate media with Nitrite 20mM
N.D.
+0.2
-0.1
+0.1
-1.7
stress
Furfuryl Alcohol 0.2 vol%
N.D.
+0.1
-0.1
+0.2
-1.6
carbon source
L-Alanine (C)
N.D.
+0.3
-0.5
+0.2
-1.4
stress
Def Chloride 400 mM
N.D.
+0.5
+0.2
+0.2
-2.3
carbon source
L-tyrosine (C)
N.D.
-0.2
+0.1
+0.3
-1.4
anaerobic
Nitrite/ lactate media with Nitrite 20mM
N.D.
+0.2
-0.4
+0.3
-1.3
stress
nitrite 2.5 mM
N.D.
+0.2
+0.3
-0.2
-1.4
nitrogen source
L-Isoleucine (N)
N.D.
-0.9
-0.6
-0.2
+0.5
RCH2 grown on a colony of N2F3
N.D.
+0.7
-0.7
+0.2
-1.2
stress
Fusidic 0.016 mg/ml
N.D.
-0.0
+0.7
+0.2
-1.6
stress
benzoic 0.4 mg/ml
N.D.
-0.2
+0.5
+0.2
-1.2
stress
Nickel (II) chloride 0.9 mM
N.D.
-1.0
-0.1
+0.0
+1.0
carbon source
propionate (C)
N.D.
+0.4
-1.0
+0.3
+0.3
stress
Def Cephalothin 0.08 mg/ml
N.D.
-0.6
-0.3
-0.0
+1.7
stress
Def Carbenicillin 0.008 mg/ml
N.D.
+0.5
+0.7
+0.4
-0.7
stress
Lactate-nitrate; anaerobic; nickel stress sample3
N.D.
-0.1
+0.3
+0.0
+2.1
stress
Def Neomycin 0.0008 mg/ml
N.D.
+0.4
+0.4
+0.3
+1.4
stress
Chlorate 75 mM
N.D.
+1.2
+0.1
+0.5
+1.0
RCH2 grown on a colony of N2C3
N.D.
-0.2
+0.7
-0.6
+3.0
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