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Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_1348 and Psest_1349 are separated by 86 nucleotides
Psest_1349 and Psest_1350 are separated by 186 nucleotides
Psest_1350 and Psest_1351 are separated by 131 nucleotides
Psest_1351 and Psest_1352 are separated by 253 nucleotides
Psest_1348: Psest_1348 - putative allantoin catabolism protein, at 1,458,852 to 1,459,691
_1348
Psest_1349: Psest_1349 - Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily), at 1,459,778 to 1,460,593
_1349
Psest_1350: Psest_1350 - Metal-dependent hydrolases of the beta-lactamase superfamily III, at 1,460,780 to 1,461,772
_1350
Psest_1351: Psest_1351 - hypothetical protein, at 1,461,904 to 1,463,505
_1351
Psest_1352: Psest_1352 - Predicted membrane protein, at 1,463,759 to 1,464,922
_1352
Group
Condition
Psest
_1348
Psest
_1349
Psest
_1350
Psest
_1351
Psest
_1352
nitrogen source
L-Isoleucine (N)
-0.5
-0.5
-0.4
-0.7
-0.5
RCH2 grown on a colony of N2C3
+0.5
-2.6
+0.2
-0.7
+0.4
nitrogen source
L-Glutamic (N)
+0.2
-1.9
-0.2
-0.5
+0.3
stress
Def 2-Furfuraldehyde 0.032 vol%
-0.2
-1.0
+0.2
-0.3
-0.4
RCH2 grown on a colony of Serratia
-0.5
-0.6
+0.3
-0.8
-0.1
stress
Def 5-Hydroxymethylfurfural 5 mM
+0.1
-0.8
-0.3
-0.5
-0.2
stress
Chloride 200 mM
-0.3
-1.0
-0.4
-0.1
+0.1
stress
Benzethonium chloride 0.0125 mM
-0.7
-0.8
+0.2
-0.0
-0.3
RCH2 grown on a colony of N2A2
-0.1
-1.7
+0.2
-0.0
+0.1
stress
Def Chlorate 40 mM
+0.2
-0.8
-0.4
-0.4
-0.2
stress
syringaldehyde 3 mM
-0.4
-1.1
-0.0
-0.2
+0.3
stress
2-Furfuraldehyde 0.05 vol%
-0.0
-1.3
+0.2
-0.3
+0.2
stress
Phosphomycin 0.012 mg/ml
+0.2
-1.5
+0.0
+0.1
+0.0
RCH2 grown on a colony of N2F3
-0.3
-0.8
+0.4
-0.3
+0.0
anaerobic
Nitrate/ lactate media with Nitrate 250mM
-0.2
-1.3
+0.2
+0.4
+0.3
stress
Def Chlorate 20 mM
+0.1
-1.0
+0.2
+0.4
-0.4
anaerobic
Nitrate/ lactate media with Nitrate 250mM
-0.2
-0.9
+0.3
+0.4
+0.0
stress
Bacitracin 0.25 mg/ml
+0.3
-1.3
+0.4
+0.3
+0.1
stress
nitrate 250 mM
-0.0
+1.2
-0.4
-0.3
-0.4
stress
1-ethyl-3-methylimidazolium acetate 40 mM
+0.3
+0.4
+0.1
-0.7
+0.3
stress
nitrite 2.5 mM
+0.1
+1.3
-0.3
-0.3
-0.2
stress
Furfuryl Alcohol 0.2 vol%
-0.0
+1.3
+0.2
-0.3
-0.2
nitrogen source
Putrescine (N)
+0.6
+0.6
+0.2
-0.4
+0.2
stress
Lactate-nitrate; anaerobic sample3
-0.2
+0.8
+0.3
+0.5
-0.0
stress
5-Hydroxymethylfurfural 5 mM
+0.0
+1.4
-0.1
+0.2
-0.1
metal limitation
Lactate-nitrite with YE; anaerobic; with copper; sample2
-0.1
+1.1
+0.2
+0.2
+0.2
nitrogen source
Adenine (N)
+0.3
+0.9
+0.3
+0.3
-0.1
stress
Def Carbenicillin 0.008 mg/ml
+0.2
+1.0
+0.4
+0.2
+0.1
stress
Lactate-nitrate; anaerobic; uranyl acetate stress sample3
-0.2
+1.3
+0.3
+0.3
+0.0
stress
Def Carbenicillin 0.02 mg/ml
+0.2
+1.1
+0.3
+0.2
+0.2
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