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Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_1307 and Psest_1308 are separated by 164 nucleotides
Psest_1308 and Psest_1309 are separated by 2 nucleotides
Psest_1309 and Psest_1310 overlap by 4 nucleotides
Psest_1310 and Psest_1311 overlap by 4 nucleotides
Psest_1307: Psest_1307 - Dienelactone hydrolase and related enzymes, at 1,408,189 to 1,408,995
_1307
Psest_1308: Psest_1308 - ABC-type branched-chain amino acid transport systems, ATPase component, at 1,409,160 to 1,409,861
_1308
Psest_1309: Psest_1309 - ABC-type branched-chain amino acid transport systems, ATPase component, at 1,409,864 to 1,410,631
_1309
Psest_1310: Psest_1310 - ABC-type branched-chain amino acid transport system, permease component, at 1,410,628 to 1,411,884
_1310
Psest_1311: Psest_1311 - Branched-chain amino acid ABC-type transport system, permease components, at 1,411,881 to 1,412,804
_1311
Group
Condition
Psest
_1307
Psest
_1308
Psest
_1309
Psest
_1310
Psest
_1311
nitrogen source
L-Isoleucine (N)
-0.0
-1.3
-1.2
-1.4
-1.4
nitrogen source
L-Isoleucine (N)
+0.1
-1.3
-1.3
-1.2
-1.1
nitrogen source
L-Isoleucine (N)
+0.0
-0.8
-0.7
-0.9
-1.0
carbon source
L-Proline (C)
-0.3
-0.4
-0.6
-0.6
-0.6
stress
Furfuryl Alcohol 0.05 vol%
-0.5
-0.7
-0.7
-0.1
-0.1
nitrogen source
L-Alanine (N)
-0.0
-0.7
-0.7
-0.2
-0.5
stress
Def Carbenicillin 0.02 mg/ml
-0.2
-0.5
-0.3
-0.8
-0.3
nitrogen source
L-Glutamine (N)
+0.2
-0.6
-0.5
-0.6
-0.4
nitrogen source
D-Alanine (N)
+0.1
-0.5
-0.5
-0.6
-0.4
nitrogen source
L-Glutamine (N)
+0.2
-0.5
-0.4
-0.6
-0.7
nitrogen source
L-Alanine (N)
+0.2
-0.6
-0.4
-0.4
-0.4
carbon source
L-Proline (C)
+0.1
-0.7
-0.3
-0.5
-0.3
nitrogen source
D-Alanine (N)
+0.3
-0.4
-0.4
-0.6
-0.3
stress
Nalidixic 0.00390625 mg/ml
-1.1
-0.0
-0.7
+0.6
+0.0
stress
Chlorate 75 mM
+0.2
-0.8
+0.4
-0.1
-0.5
vitamin
No vitamins t1
-0.3
-0.3
-0.4
+0.6
-0.4
stress
Doxycycline hyclate 0.0002 mg/ml
+0.3
+0.3
-0.3
-1.0
-0.1
nitrogen source
L-Isoleucine (N)
+0.9
+0.3
-0.7
-0.4
-0.6
carbon source
propionate (C)
-1.0
-0.1
+0.2
+0.6
+0.4
stress
Neomycin 0.004 mg/ml
+0.7
+0.5
-0.6
-0.1
-0.2
stress
Def Carbenicillin 0.008 mg/ml
-0.3
+1.0
+0.4
-0.3
-0.5
RCH2 grown on a colony of Serratia
+0.4
+1.0
-0.6
-0.2
-0.2
RCH2 grown on a colony of N2C3
+0.4
-1.2
+1.1
+0.4
+0.1
stress
Def Benzalkonium Chloride 0.002 mg/ml
+0.1
+1.1
+0.5
-0.1
-0.2
carbon source
propionate (C)
-0.3
+0.9
+0.4
+0.1
+0.5
anaerobic
nitrate reduction - anaerobic
+0.2
+1.1
+0.6
-0.0
-0.1
stress
Def Benzethonium chloride 0.008 mM
+0.2
+1.2
+0.5
+0.0
-0.1
stress
sodium fluoride 6.25 mM
+0.5
+0.5
+0.2
+0.3
+0.4
stress
Fusidic 0.016 mg/ml
+0.6
+1.1
+0.5
+0.1
+0.0
stress
Cephalothin 0.04 mg/ml
+0.5
+1.6
+0.8
-0.1
+0.1
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