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Cofit
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_1298 and Psest_1299 are separated by 75 nucleotides
Psest_1299 and Psest_1300 are separated by 44 nucleotides
Psest_1300 and Psest_1301 are separated by 48 nucleotides
Psest_1301 and Psest_1302 are separated by 192 nucleotides
Psest_1298: Psest_1298 - tRNA_Ala_GGC, at 1,404,391 to 1,404,466
_1298
Psest_1299: Psest_1299 - tRNA_Glu_TTC, at 1,404,542 to 1,404,617
_1299
Psest_1300: Psest_1300 - tRNA_Ala_GGC, at 1,404,662 to 1,404,737
_1300
Psest_1301: Psest_1301 - tRNA_Glu_TTC, at 1,404,786 to 1,404,861
_1301
Psest_1302: Psest_1302 - Predicted thioesterase, at 1,405,054 to 1,405,503
_1302
Group
Condition
Psest
_1298
Psest
_1299
Psest
_1300
Psest
_1301
Psest
_1302
carbon source
propionate (C)
N.D.
N.D.
N.D.
N.D.
-3.1
stress
nitrate 250 mM
N.D.
N.D.
N.D.
N.D.
-2.2
carbon source
propionate (C)
N.D.
N.D.
N.D.
N.D.
-2.0
stress
nitrate 200 mM
N.D.
N.D.
N.D.
N.D.
-1.4
stress
Gentamicin 0.0016 mg/ml
N.D.
N.D.
N.D.
N.D.
-1.2
stress
Def Carbenicillin 0.008 mg/ml
N.D.
N.D.
N.D.
N.D.
-1.2
carbon source
RCH2 defined media
N.D.
N.D.
N.D.
N.D.
-1.1
RCH2 grown on a colony of N2F3
N.D.
N.D.
N.D.
N.D.
-1.1
radiation
Ionizing radiation, 319.06 Gy,
N.D.
N.D.
N.D.
N.D.
-1.1
stress
Nickel (II) chloride 1 mM
N.D.
N.D.
N.D.
N.D.
-1.0
stress
Def Benzalkonium Chloride 0.002 mg/ml
N.D.
N.D.
N.D.
N.D.
-0.9
stress
Cephalothin 0.04 mg/ml
N.D.
N.D.
N.D.
N.D.
-0.9
stress
Def Carbenicillin 0.02 mg/ml
N.D.
N.D.
N.D.
N.D.
-0.9
stress
acetate 80 mM
N.D.
N.D.
N.D.
N.D.
-0.9
stress
Thallium(I) acetate 0.09 mg/ml
N.D.
N.D.
N.D.
N.D.
-0.9
stress
Thallium(I) acetate 0.08 mg/ml
N.D.
N.D.
N.D.
N.D.
-0.8
stress
A22 0.002 mg/ml
N.D.
N.D.
N.D.
N.D.
-0.8
stress
Nalidixic 0.00390625 mg/ml
N.D.
N.D.
N.D.
N.D.
-0.8
carbon source
L-Asparagine (C)
N.D.
N.D.
N.D.
N.D.
-0.8
stress
Def Polymyxin B sulfate 0.00008 mg/ml
N.D.
N.D.
N.D.
N.D.
-0.8
carbon source
L-tyrosine (C)
N.D.
N.D.
N.D.
N.D.
-0.8
anaerobic
nitrate reduction - anaerobic
N.D.
N.D.
N.D.
N.D.
-0.8
stress
Def 2-Furfuraldehyde 0.032 vol%
N.D.
N.D.
N.D.
N.D.
-0.7
stress
Nickel (II) chloride 0.9 mM
N.D.
N.D.
N.D.
N.D.
-0.7
stress
methylglyoxal 0.0016 vol%
N.D.
N.D.
N.D.
N.D.
-0.7
stress
A22 0.002 mg/ml
N.D.
N.D.
N.D.
N.D.
+0.7
lb
LB
N.D.
N.D.
N.D.
N.D.
+0.7
nitrogen source
L-Citrulline (N)
N.D.
N.D.
N.D.
N.D.
+1.0
stress
Nalidixic 0.00390625 mg/ml
N.D.
N.D.
N.D.
N.D.
+1.2
RCH2 grown on a colony of 8R2A
N.D.
N.D.
N.D.
N.D.
+1.8
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