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Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_1181 and Psest_1182 are separated by 252 nucleotides
Psest_1182 and Psest_1183 are separated by 5 nucleotides
Psest_1183 and Psest_1184 are separated by 16 nucleotides
Psest_1184 and Psest_1185 are separated by 106 nucleotides
Psest_1181: Psest_1181 - Glyoxylate carboligase (EC 4.1.1.47)
(from data)
, at 1,283,252 to 1,285,033
_1181
Psest_1182: Psest_1182 - Transcriptional regulator, at 1,285,286 to 1,286,194
_1182
Psest_1183: Psest_1183 - hydroxyisourate hydrolase, at 1,286,200 to 1,286,610
_1183
Psest_1184: Psest_1184 - Uncharacterized protein, possibly involved in utilization of glycolate and propanediol, at 1,286,627 to 1,287,166
_1184
Psest_1185: Psest_1185 - heavy metal response regulator, at 1,287,273 to 1,287,947
_1185
Group
Condition
Psest
_1181
Psest
_1182
Psest
_1183
Psest
_1184
Psest
_1185
carbon source
Glycolic Acid (C)
-5.4
-6.1
-0.1
-0.0
+0.0
carbon source
Glycolic Acid (C)
-4.3
-5.5
-0.2
-0.2
+0.7
stress
Def 2-Furfuraldehyde 0.032 vol%
+0.1
-0.1
-1.6
-0.4
-0.8
stress
Carbenicillin 0.008 mg/ml
-0.2
+0.0
-0.7
-1.0
-0.9
stress
Nickel (II) chloride 0.75 mM
+0.3
+0.3
-0.6
-0.5
-1.9
RCH2 grown on a colony of ecoli
+0.1
+0.4
-0.9
+0.2
-2.1
stress
D-Cycloserine 0.032 mg/ml
+0.1
-0.5
-1.1
+0.3
-0.9
RCH2 grown on a colony of N2F3
-0.3
-0.3
+0.7
+0.1
-2.2
stress
Benzethonium chloride 0.01 mM
-0.1
-1.1
-0.5
+0.5
-0.9
nitrogen source
nitrite (N)
-0.4
-0.8
-1.3
+0.1
+0.3
temperature
LB 30C timecourse2 timepoint 2
-0.1
-0.4
-1.8
-0.2
+0.5
stress
Nickel (II) chloride 0.8 mM
-0.1
+0.3
-0.8
+0.3
-1.3
lb
LB
+0.0
-0.1
+0.9
-0.6
-1.4
RCH2 grown on a colony of N2C3
-0.4
+0.9
+0.4
-0.1
-2.2
stress
Thallium(I) acetate 0.1 mg/ml
+0.5
+0.0
+0.5
-0.6
-1.4
stress
Cobalt chloride 0.05 mM
+0.7
+0.3
-0.7
+0.1
-1.1
RCH2 grown on a colony of Serratia
+0.3
+0.3
-1.4
+0.8
-0.8
stress
Doxycycline hyclate 0.0002 mg/ml
+0.3
-0.2
-1.4
+1.2
-0.1
RCH2 grown on a colony of N2A2
+0.4
+0.2
+0.9
+0.2
-1.7
nitrogen source
L-Isoleucine (N)
-0.6
-0.2
-0.8
+0.7
+1.0
stress
Cephalothin 0.04 mg/ml
+0.5
+0.5
-1.4
+0.4
+0.1
RCH2 grown on a colony of Pseudomonas migulae strain N1B4
-0.1
-0.2
+0.8
+1.0
-0.9
stress
Def Benzethonium chloride 0.008 mM
+0.2
+0.4
-1.1
+0.6
+0.6
stress
Choline chloride 90 mM
+0.7
+0.7
+0.6
-0.2
-0.9
carbon source
RCH2 defined media
+0.1
+0.4
-1.1
+0.9
+0.6
stress
nitrate 250 mM
+0.0
+0.9
-1.0
+0.7
+0.7
lb
LB
+0.0
-0.6
+1.4
+0.6
+0.3
stress
Chlorate 75 mM
-0.4
+1.0
+1.0
-0.2
+0.4
stress
Def Carbenicillin 0.02 mg/ml
+0.7
+0.4
+0.5
+0.8
+0.6
stress
Def Carbenicillin 0.008 mg/ml
+0.0
+1.0
+0.2
+0.9
+1.3
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