Fitness for 5 genes in Pseudomonas stutzeri RCH2

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500 ntPsest_1162 and Psest_1163 are separated by 125 nucleotidesPsest_1163 and Psest_1164 are separated by 282 nucleotidesPsest_1164 and Psest_1165 are separated by 401 nucleotidesPsest_1165 and Psest_1166 are separated by 93 nucleotides Psest_1162: Psest_1162 - Spermidine synthase, at 1,262,666 to 1,263,349 _1162 Psest_1163: Psest_1163 - diguanylate cyclase (GGDEF) domain, at 1,263,475 to 1,265,535 _1163 Psest_1164: Psest_1164 - Superoxide dismutase, at 1,265,818 to 1,266,399 _1164 Psest_1165: Psest_1165 - Lysine efflux permease, at 1,266,801 to 1,267,409 _1165 Psest_1166: Psest_1166 - transcriptional regulator, ArgP family, at 1,267,503 to 1,268,393 _1166
Group Condition Psest_1162 Psest_1163 Psest_1164 Psest_1165 Psest_1166
carbon source butyrate (C) +0.0 -4.6 N.D. -0.1 +0.1
RCH2 grown on a colony of Serratia -3.6 +0.6 N.D. -0.2 -0.9
temperature LB 30C timecourse1 timepoint 3 -0.9 -2.8 N.D. -0.2 -0.1
carbon source butyrate (C) +0.0 -3.8 N.D. -0.1 -0.2
carbon source RCH2 defined media -0.7 -2.5 N.D. +0.0 -0.5
stress Def Carbenicillin 0.008 mg/ml -1.0 -2.0 N.D. +0.1 -0.6
carbon source L-Lactate (C) -0.1 -2.5 N.D. -0.1 -0.9
carbon source butyrate (C) +0.3 -3.1 N.D. +0.4 -0.7
stress Cephalothin 0.04 mg/ml -0.8 -2.8 N.D. +0.5 -0.2
stress Chlorate 75 mM -0.2 -1.6 N.D. -0.1 -1.3
stress Def Polymyxin B sulfate 0.00008 mg/ml -0.2 -2.3 N.D. -0.0 -0.4
stress Paraquat dichloride 0.015 mg/ml -1.4 -1.0 N.D. -0.0 -0.4
stress Nalidixic 0.00390625 mg/ml -2.2 -0.3 N.D. -0.2 -0.0
stress Nickel (II) chloride 0.8 mM +0.1 -1.0 N.D. -0.2 -1.5
stress Vancomycin 0.016 mg/ml -1.0 -1.1 N.D. +0.2 -0.7
stress Def Benzethonium chloride 0.008 mM -0.3 -2.3 N.D. +0.1 -0.2
stress methylglyoxal 0.0016 vol% +0.2 -1.8 N.D. -0.2 -0.6
RCH2 grown on a colony of N2F3 -1.7 -0.6 N.D. +0.6 -0.8
stress Gentamicin 0.0016 mg/ml -0.5 -2.1 N.D. +0.2 +0.1
stress nitrate 250 mM +0.3 -2.3 N.D. +0.1 -0.4
stress Def 2-Furfuraldehyde 0.032 vol% -0.7 -2.1 N.D. +0.6 -0.1
nitrogen source L-Valine (N) +0.5 -2.3 N.D. +0.3 -0.4
RCH2 grown on a colony of Pseudomonas migulae strain N1B4 -1.4 +0.5 N.D. +0.2 -1.1
anaerobic Nitrate/ lactate media with Nitrate 250mM -1.4 -0.2 N.D. -0.6 +0.6
RCH2 grown on a colony of Pseudomonas migulae strain N1B4 -2.4 -0.0 N.D. +0.1 +0.8
stress Chloride 200 mM +0.6 -2.1 N.D. +0.2 -0.3
stress sodium fluoride 6.25 mM +0.8 -1.6 N.D. +0.4 -0.3
carbon source L-tyrosine (C) +0.7 +0.5 N.D. +0.3 -1.6
stress Spectinomycin 0.00625 mg/ml +1.0 -0.3 N.D. -0.3 +1.3
RCH2 grown on a colony of N2C3 +0.4 +0.9 N.D. +0.8 +0.9
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