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Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_0111 and Psest_0112 are separated by 332 nucleotides
Psest_0112 and Psest_0113 are separated by 58 nucleotides
Psest_0113 and Psest_0114 overlap by 4 nucleotides
Psest_0114 and Psest_0115 are separated by 191 nucleotides
Psest_0111: Psest_0111 - Glycine/D-amino acid oxidases (deaminating), at 109,205 to 110,464
_0111
Psest_0112: Psest_0112 - Transcriptional regulator, at 110,797 to 111,714
_0112
Psest_0113: Psest_0113 - Uncharacterized protein conserved in bacteria, at 111,773 to 112,414
_0113
Psest_0114: Psest_0114 - RNA polymerase sigma factor, sigma-70 family, at 112,411 to 112,980
_0114
Psest_0115: Psest_0115 - Predicted integral membrane protein, at 113,172 to 113,444
_0115
Group
Condition
Psest
_0111
Psest
_0112
Psest
_0113
Psest
_0114
Psest
_0115
RCH2 grown on a colony of Serratia
-0.2
+0.5
-3.5
-0.3
-5.4
stress
nitrate 250 mM
-0.0
+0.1
-3.4
-2.0
-0.8
carbon source
propionate (C)
-0.4
+0.7
-0.9
-0.6
-4.2
anaerobic
Nitrate/ lactate media with Nitrate 250mM
+0.1
-0.2
+0.1
-1.4
-4.0
RCH2 grown on a colony of Serratia
+0.3
-0.5
+0.5
-0.4
-5.3
vitamin
No vitamins t1
+0.3
-0.4
-0.1
-1.1
-2.7
RCH2 grown on a colony of N2F3
-0.3
+0.3
+0.0
-2.3
-1.7
stress
Polymyxin B sulfate 0.0001 mg/ml
+0.0
+0.5
-1.3
-2.8
-0.1
nitrogen source
Glycine (N)
-4.2
-0.0
+0.1
+0.5
-0.0
nitrogen source
Glycine (N)
-3.6
+0.1
+0.0
-0.5
+0.4
stress
Neomycin 0.004 mg/ml
+0.2
-0.4
-1.0
-1.4
-0.7
stress
syringaldehyde 3 mM
-0.3
+0.3
+0.4
-1.1
-2.5
stress
nitrate 200 mM
+0.5
+0.3
-2.7
-0.4
-0.8
nitrogen source
Glycine (N)
-2.2
+0.2
-0.1
-0.9
+0.2
stress
sodium fluoride 8.5 mM
+0.3
-0.4
-0.1
-1.5
-1.2
stress
Carbenicillin 0.008 mg/ml
-0.2
+0.3
-0.2
-1.2
-1.6
RCH2 grown on a colony of N2A2
-0.1
-0.5
-2.0
-0.9
+1.2
nitrogen source
L-Glutamic (N)
-0.4
+0.7
-0.7
-0.7
-1.0
nitrogen source
L-Citrulline (N)
-0.1
-0.1
+0.7
-0.7
-1.9
stress
Lomefloxacin 0.0001 mM
+0.2
+0.5
-0.5
-1.2
-1.0
temperature
Glucose defined media 26C sample1
+0.3
-0.3
-0.6
+0.8
-1.7
stress
Phosphomycin 0.012 mg/ml
-0.1
-0.1
-1.3
-0.7
+1.0
RCH2 grown on a colony of 8R2A
-0.1
-0.1
-1.4
-1.1
+1.6
RCH2 grown on a colony of ecoli
+0.2
-0.2
-1.6
+1.1
+0.4
anaerobic
nitrate reduction - anaerobic
+0.3
+0.3
-0.6
-1.2
+1.2
nitrogen source
nitrite (N)
+0.6
-0.5
-0.9
-0.4
+1.4
stress
Spectinomycin 0.00625 mg/ml
+0.3
-0.4
-0.6
-0.4
+2.0
stress
Cephalothin 0.04 mg/ml
+0.8
-0.2
+0.2
-0.8
+1.4
stress
Furfuryl Alcohol 0.05 vol%
-0.5
+0.2
+1.4
-0.5
+1.2
stress
Lactate-nitrate; anaerobic; nickel stress sample1
+0.1
-0.1
+0.6
+1.8
+1.0
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