Fitness for 5 genes in Pseudomonas stutzeri RCH2

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500 ntPsest_0111 and Psest_0112 are separated by 332 nucleotidesPsest_0112 and Psest_0113 are separated by 58 nucleotidesPsest_0113 and Psest_0114 overlap by 4 nucleotidesPsest_0114 and Psest_0115 are separated by 191 nucleotides Psest_0111: Psest_0111 - Glycine/D-amino acid oxidases (deaminating), at 109,205 to 110,464 _0111 Psest_0112: Psest_0112 - Transcriptional regulator, at 110,797 to 111,714 _0112 Psest_0113: Psest_0113 - Uncharacterized protein conserved in bacteria, at 111,773 to 112,414 _0113 Psest_0114: Psest_0114 - RNA polymerase sigma factor, sigma-70 family, at 112,411 to 112,980 _0114 Psest_0115: Psest_0115 - Predicted integral membrane protein, at 113,172 to 113,444 _0115
Group Condition Psest_0111 Psest_0112 Psest_0113 Psest_0114 Psest_0115
RCH2 grown on a colony of Serratia -0.2 +0.5 -3.5 -0.3 -5.4
stress nitrate 250 mM -0.0 +0.1 -3.4 -2.0 -0.8
carbon source propionate (C) -0.4 +0.7 -0.9 -0.6 -4.2
anaerobic Nitrate/ lactate media with Nitrate 250mM +0.1 -0.2 +0.1 -1.4 -4.0
RCH2 grown on a colony of Serratia +0.3 -0.5 +0.5 -0.4 -5.3
vitamin No vitamins t1 +0.3 -0.4 -0.1 -1.1 -2.7
RCH2 grown on a colony of N2F3 -0.3 +0.3 +0.0 -2.3 -1.7
stress Polymyxin B sulfate 0.0001 mg/ml +0.0 +0.5 -1.3 -2.8 -0.1
nitrogen source Glycine (N) -4.2 -0.0 +0.1 +0.5 -0.0
nitrogen source Glycine (N) -3.6 +0.1 +0.0 -0.5 +0.4
stress Neomycin 0.004 mg/ml +0.2 -0.4 -1.0 -1.4 -0.7
stress syringaldehyde 3 mM -0.3 +0.3 +0.4 -1.1 -2.5
stress nitrate 200 mM +0.5 +0.3 -2.7 -0.4 -0.8
nitrogen source Glycine (N) -2.2 +0.2 -0.1 -0.9 +0.2
stress sodium fluoride 8.5 mM +0.3 -0.4 -0.1 -1.5 -1.2
stress Carbenicillin 0.008 mg/ml -0.2 +0.3 -0.2 -1.2 -1.6
RCH2 grown on a colony of N2A2 -0.1 -0.5 -2.0 -0.9 +1.2
nitrogen source L-Glutamic (N) -0.4 +0.7 -0.7 -0.7 -1.0
nitrogen source L-Citrulline (N) -0.1 -0.1 +0.7 -0.7 -1.9
stress Lomefloxacin 0.0001 mM +0.2 +0.5 -0.5 -1.2 -1.0
temperature Glucose defined media 26C sample1 +0.3 -0.3 -0.6 +0.8 -1.7
stress Phosphomycin 0.012 mg/ml -0.1 -0.1 -1.3 -0.7 +1.0
RCH2 grown on a colony of 8R2A -0.1 -0.1 -1.4 -1.1 +1.6
RCH2 grown on a colony of ecoli +0.2 -0.2 -1.6 +1.1 +0.4
anaerobic nitrate reduction - anaerobic +0.3 +0.3 -0.6 -1.2 +1.2
nitrogen source nitrite (N) +0.6 -0.5 -0.9 -0.4 +1.4
stress Spectinomycin 0.00625 mg/ml +0.3 -0.4 -0.6 -0.4 +2.0
stress Cephalothin 0.04 mg/ml +0.8 -0.2 +0.2 -0.8 +1.4
stress Furfuryl Alcohol 0.05 vol% -0.5 +0.2 +1.4 -0.5 +1.2
stress Lactate-nitrate; anaerobic; nickel stress sample1 +0.1 -0.1 +0.6 +1.8 +1.0
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