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Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_1160 and Psest_1161 are separated by 1 nucleotides
Psest_1161 and Psest_1162 are separated by 14 nucleotides
Psest_1162 and Psest_1163 are separated by 125 nucleotides
Psest_1163 and Psest_1164 are separated by 282 nucleotides
Psest_1160: Psest_1160 - Uncharacterized conserved protein, at 1,261,184 to 1,261,756
_1160
Psest_1161: Psest_1161 - E3 Ubiquitin ligase., at 1,261,758 to 1,262,651
_1161
Psest_1162: Psest_1162 - Spermidine synthase, at 1,262,666 to 1,263,349
_1162
Psest_1163: Psest_1163 - diguanylate cyclase (GGDEF) domain, at 1,263,475 to 1,265,535
_1163
Psest_1164: Psest_1164 - Superoxide dismutase, at 1,265,818 to 1,266,399
_1164
Group
Condition
Psest
_1160
Psest
_1161
Psest
_1162
Psest
_1163
Psest
_1164
carbon source
butyrate (C)
-0.7
+0.3
+0.0
-4.6
N.D.
temperature
LB 30C timecourse1 timepoint 3
-0.3
-0.7
-0.9
-2.8
N.D.
stress
Cephalothin 0.04 mg/ml
-0.3
-0.5
-0.8
-2.8
N.D.
stress
Paraquat dichloride 0.015 mg/ml
+0.0
-1.6
-1.4
-1.0
N.D.
carbon source
butyrate (C)
-0.1
-0.1
+0.0
-3.8
N.D.
carbon source
butyrate (C)
-1.0
-0.0
+0.3
-3.1
N.D.
stress
Def Benzethonium chloride 0.008 mM
-0.5
-0.9
-0.3
-2.3
N.D.
stress
Chlorate 75 mM
+0.2
-2.4
-0.2
-1.6
N.D.
RCH2 grown on a colony of Pseudomonas migulae strain N1B4
-0.5
-0.7
-2.4
-0.0
N.D.
stress
Def Benzalkonium Chloride 0.002 mg/ml
-0.5
-0.8
-0.3
-2.0
N.D.
RCH2 grown on a colony of N2F3
-0.6
-0.6
-1.7
-0.6
N.D.
stress
Fusidic 0.016 mg/ml
-0.7
-1.3
+0.4
-1.8
N.D.
stress
Def Carbenicillin 0.008 mg/ml
-0.4
+0.1
-1.0
-2.0
N.D.
carbon source
RCH2 defined media
-0.1
-0.1
-0.7
-2.5
N.D.
stress
Def Carbenicillin 0.02 mg/ml
-0.4
-1.4
-0.3
-1.0
N.D.
stress
Vancomycin 0.016 mg/ml
-0.7
-0.3
-1.0
-1.1
N.D.
stress
Def 2-Furfuraldehyde 0.032 vol%
-0.1
-0.2
-0.7
-2.1
N.D.
stress
Neomycin 0.004 mg/ml
-0.2
-1.2
-1.1
-0.6
N.D.
temperature
LB 30C timecourse2 timepoint 1
-0.0
-1.4
+0.2
-1.8
N.D.
stress
nitrate 250 mM
-0.7
-0.3
+0.3
-2.3
N.D.
stress
Gentamicin 0.0016 mg/ml
-0.4
+0.2
-0.5
-2.1
N.D.
RCH2 grown on a colony of Serratia
-1.0
+1.5
-3.6
+0.6
N.D.
stress
Chloride 200 mM
-0.6
-0.2
+0.6
-2.1
N.D.
nitrogen source
L-Valine (N)
+0.3
-0.1
+0.5
-2.3
N.D.
stress
Nalidixic 0.00390625 mg/ml
+0.2
+1.0
-2.2
-0.3
N.D.
stress
D-Cycloserine 0.032 mg/ml
-0.3
-1.9
+0.4
+0.5
N.D.
stress
nitrate 200 mM
+1.1
-1.2
+0.3
-1.1
N.D.
carbon source
L-tyrosine (C)
+1.8
-0.9
+0.3
-0.8
N.D.
stress
Polymyxin B sulfate 0.0001 mg/ml
+0.3
+1.8
-1.6
+0.0
N.D.
RCH2 grown on a colony of N2C3
-0.7
+1.4
+0.4
+0.9
N.D.
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