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Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psest_0109 and Psest_0110 are separated by 5 nucleotides
Psest_0110 and Psest_0111 are separated by 436 nucleotides
Psest_0111 and Psest_0112 are separated by 332 nucleotides
Psest_0112 and Psest_0113 are separated by 58 nucleotides
Psest_0109: Psest_0109 - malonate transporter, MadL subunit, at 107,576 to 107,998
_0109
Psest_0110: Psest_0110 - malonate transporter, MadM subunit, at 108,004 to 108,768
_0110
Psest_0111: Psest_0111 - Glycine/D-amino acid oxidases (deaminating), at 109,205 to 110,464
_0111
Psest_0112: Psest_0112 - Transcriptional regulator, at 110,797 to 111,714
_0112
Psest_0113: Psest_0113 - Uncharacterized protein conserved in bacteria, at 111,773 to 112,414
_0113
Group
Condition
Psest
_0109
Psest
_0110
Psest
_0111
Psest
_0112
Psest
_0113
nitrogen source
Glycine (N)
-0.0
+0.2
-4.2
-0.0
+0.1
nitrogen source
Glycine (N)
-0.1
+0.3
-3.6
+0.1
+0.0
RCH2 grown on a colony of Serratia
-0.2
+0.3
-0.2
+0.5
-3.5
stress
5-Hydroxymethylfurfural 5 mM
-0.5
-0.4
+0.0
-0.5
-0.9
RCH2 grown on a colony of N2A2
+0.2
+0.3
-0.1
-0.5
-2.0
stress
nitrate 200 mM
-0.1
+0.1
+0.5
+0.3
-2.7
nitrogen source
L-Alanine (N)
-0.3
-0.6
-0.0
-0.3
-0.7
stress
nitrate 250 mM
+0.8
+0.5
-0.0
+0.1
-3.4
nitrogen source
Glycine (N)
+0.2
+0.4
-2.2
+0.2
-0.1
stress
Phosphomycin 0.012 mg/ml
-0.2
+0.2
-0.1
-0.1
-1.3
stress
Phosphomycin 0.012 mg/ml
+0.0
+0.3
+0.0
+0.1
-2.0
RCH2 grown on a colony of ecoli
+0.2
-0.1
+0.2
-0.2
-1.6
stress
Vanillin 2 mM
-0.2
-0.4
-0.8
+0.4
-0.2
carbon source
propionate (C)
-0.2
+0.2
-0.5
+0.2
-0.8
RCH2 grown on a colony of 8R2A
+0.5
+0.0
-0.1
-0.1
-1.4
stress
nitrate 200 mM
-0.1
+0.2
+0.0
+0.2
-1.4
stress
perchlorate 25 mM
-0.2
+0.2
+0.4
-0.0
-1.0
nitrogen source
nitrate (N)
+0.2
+0.2
+0.5
-0.5
-0.8
carbon source
propionate (C)
+0.1
+0.3
-0.4
+0.7
-0.9
stress
Polymyxin B sulfate 0.0001 mg/ml
+0.3
+0.4
+0.0
+0.5
-1.3
stress
Furfuryl Alcohol 0.05 vol%
-0.2
-0.8
-0.5
+0.2
+1.4
nitrogen source
nitrite (N)
+0.4
+0.6
+0.6
-0.5
-0.9
nitrogen source
L-Glutamic (N)
+0.6
+0.1
-0.4
+0.7
-0.7
anaerobic
nitrate reduction - anaerobic
+0.4
+0.7
+0.3
+0.3
-0.6
stress
Def Neomycin 0.0008 mg/ml
-0.1
+0.4
+0.2
-0.2
+1.1
stress
Fusidic 0.016 mg/ml
+0.5
+0.6
+0.7
+0.1
-0.4
stress
Chlorite 0.06 mM
+0.1
-0.2
+0.2
+0.3
+1.5
stress
Cephalothin 0.04 mg/ml
+0.5
+0.6
+0.8
-0.2
+0.2
stress
Def Benzethonium chloride 0.008 mM
+0.8
+0.7
+0.5
-0.1
+0.6
carbon source
RCH2 defined media
+0.5
+0.8
+0.6
+0.3
+0.5
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