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Protein
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Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_1138 and Psest_1139 are separated by 19 nucleotides
Psest_1139 and Psest_1140 are separated by 45 nucleotides
Psest_1140 and Psest_1141 are separated by 4 nucleotides
Psest_1141 and Psest_1142 are separated by 155 nucleotides
Psest_1138: Psest_1138 - ATP:cob(I)alamin adenosyltransferase, at 1,235,426 to 1,236,016
_1138
Psest_1139: Psest_1139 - PAS domain S-box, at 1,236,036 to 1,238,051
_1139
Psest_1140: Psest_1140 - 2-dehydropantoate 2-reductase, at 1,238,097 to 1,239,008
_1140
Psest_1141: Psest_1141 - diguanylate cyclase (GGDEF) domain, at 1,239,013 to 1,239,978
_1141
Psest_1142: Psest_1142 - Uncharacterized protein conserved in bacteria, at 1,240,134 to 1,240,613
_1142
Group
Condition
Psest
_1138
Psest
_1139
Psest
_1140
Psest
_1141
Psest
_1142
carbon source
butyrate (C)
N.D.
-3.7
-0.2
+0.5
-0.3
carbon source
butyrate (C)
N.D.
-3.2
-0.3
+0.3
-0.2
carbon source
butyrate (C)
N.D.
-2.1
-0.2
-0.2
-0.7
stress
Nalidixic 0.00390625 mg/ml
N.D.
-0.1
-1.1
-0.5
-0.8
stress
Cobalt chloride 0.06 mM
N.D.
-0.5
-0.6
-0.2
-0.8
stress
Lactate-nitrate; anaerobic; cobalt stress sample1
N.D.
-0.8
-0.1
+0.1
-0.9
nitrogen source
L-Valine (N)
N.D.
-1.7
+0.0
+0.5
-0.6
RCH2 grown on a colony of N2F3
N.D.
-1.0
-1.0
-0.2
+0.5
stress
Gentamicin 0.0016 mg/ml
N.D.
-1.8
+0.8
+0.1
-0.7
stress
D-Cycloserine 0.032 mg/ml
N.D.
-1.5
-0.1
-0.2
+0.7
RCH2 grown on a colony of Pseudomonas migulae strain N1B4
N.D.
-0.2
-0.8
+0.4
-0.7
stress
Polymyxin B sulfate 0.0001 mg/ml
N.D.
+0.7
-0.4
-0.2
-1.0
anaerobic
Nitrate/ lactate media with Nitrate 250mM
N.D.
-1.3
-0.3
+0.1
+0.5
stress
syringaldehyde 4 mM
N.D.
+0.6
-0.2
+0.2
-1.1
stress
nitrate 250 mM
N.D.
+1.4
+0.4
+0.0
-1.8
stress
sodium fluoride 6.25 mM
N.D.
+1.1
-0.7
-0.2
+0.2
stress
L-Lysine 200 mM
N.D.
+1.1
+0.1
+0.2
-0.7
stress
Choline Lysine 20 mM
N.D.
-1.1
+1.5
+0.9
-0.5
carbon source
L-tyrosine (C)
N.D.
-1.3
+1.1
+1.3
-0.3
stress
Paraquat dichloride 0.015 mg/ml
N.D.
+0.4
+1.2
+0.0
-0.7
carbon source
L-tyrosine (C)
N.D.
-1.1
+1.2
+0.9
+0.3
nitrogen source
L-Alanine (N)
N.D.
+0.9
+0.4
+0.4
-0.5
carbon source
L-Proline (C)
N.D.
+2.1
+0.2
-0.1
-0.8
stress
Choline Lysine 20 mM
N.D.
-0.7
+1.3
+1.2
-0.4
carbon source
L-Proline (C)
N.D.
+1.9
+0.2
-0.1
-0.5
stress
Choline chloride 90 mM
N.D.
+1.6
+0.7
+0.7
-1.1
carbon source
propionate (C)
N.D.
+1.4
-0.2
+0.0
+0.6
stress
methylglyoxal 0.0016 vol%
N.D.
+1.7
+0.3
+0.0
-0.0
stress
Choline chloride 90 mM
N.D.
+1.5
+1.0
+0.4
-0.9
stress
Def Benzalkonium Chloride 0.002 mg/ml
N.D.
+1.3
+1.7
+0.6
+0.1
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