Fitness for 5 genes in Pseudomonas stutzeri RCH2

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500 ntPsest_1138 and Psest_1139 are separated by 19 nucleotidesPsest_1139 and Psest_1140 are separated by 45 nucleotidesPsest_1140 and Psest_1141 are separated by 4 nucleotidesPsest_1141 and Psest_1142 are separated by 155 nucleotides Psest_1138: Psest_1138 - ATP:cob(I)alamin adenosyltransferase, at 1,235,426 to 1,236,016 _1138 Psest_1139: Psest_1139 - PAS domain S-box, at 1,236,036 to 1,238,051 _1139 Psest_1140: Psest_1140 - 2-dehydropantoate 2-reductase, at 1,238,097 to 1,239,008 _1140 Psest_1141: Psest_1141 - diguanylate cyclase (GGDEF) domain, at 1,239,013 to 1,239,978 _1141 Psest_1142: Psest_1142 - Uncharacterized protein conserved in bacteria, at 1,240,134 to 1,240,613 _1142
Group Condition Psest_1138 Psest_1139 Psest_1140 Psest_1141 Psest_1142
carbon source butyrate (C) N.D. -3.7 -0.2 +0.5 -0.3
carbon source butyrate (C) N.D. -3.2 -0.3 +0.3 -0.2
carbon source butyrate (C) N.D. -2.1 -0.2 -0.2 -0.7
stress Nalidixic 0.00390625 mg/ml N.D. -0.1 -1.1 -0.5 -0.8
stress Cobalt chloride 0.06 mM N.D. -0.5 -0.6 -0.2 -0.8
stress Lactate-nitrate; anaerobic; cobalt stress sample1 N.D. -0.8 -0.1 +0.1 -0.9
nitrogen source L-Valine (N) N.D. -1.7 +0.0 +0.5 -0.6
RCH2 grown on a colony of N2F3 N.D. -1.0 -1.0 -0.2 +0.5
stress Gentamicin 0.0016 mg/ml N.D. -1.8 +0.8 +0.1 -0.7
stress D-Cycloserine 0.032 mg/ml N.D. -1.5 -0.1 -0.2 +0.7
RCH2 grown on a colony of Pseudomonas migulae strain N1B4 N.D. -0.2 -0.8 +0.4 -0.7
stress Polymyxin B sulfate 0.0001 mg/ml N.D. +0.7 -0.4 -0.2 -1.0
anaerobic Nitrate/ lactate media with Nitrate 250mM N.D. -1.3 -0.3 +0.1 +0.5
stress syringaldehyde 4 mM N.D. +0.6 -0.2 +0.2 -1.1
stress nitrate 250 mM N.D. +1.4 +0.4 +0.0 -1.8
stress sodium fluoride 6.25 mM N.D. +1.1 -0.7 -0.2 +0.2
stress L-Lysine 200 mM N.D. +1.1 +0.1 +0.2 -0.7
stress Choline Lysine 20 mM N.D. -1.1 +1.5 +0.9 -0.5
carbon source L-tyrosine (C) N.D. -1.3 +1.1 +1.3 -0.3
stress Paraquat dichloride 0.015 mg/ml N.D. +0.4 +1.2 +0.0 -0.7
carbon source L-tyrosine (C) N.D. -1.1 +1.2 +0.9 +0.3
nitrogen source L-Alanine (N) N.D. +0.9 +0.4 +0.4 -0.5
carbon source L-Proline (C) N.D. +2.1 +0.2 -0.1 -0.8
stress Choline Lysine 20 mM N.D. -0.7 +1.3 +1.2 -0.4
carbon source L-Proline (C) N.D. +1.9 +0.2 -0.1 -0.5
stress Choline chloride 90 mM N.D. +1.6 +0.7 +0.7 -1.1
carbon source propionate (C) N.D. +1.4 -0.2 +0.0 +0.6
stress methylglyoxal 0.0016 vol% N.D. +1.7 +0.3 +0.0 -0.0
stress Choline chloride 90 mM N.D. +1.5 +1.0 +0.4 -0.9
stress Def Benzalkonium Chloride 0.002 mg/ml N.D. +1.3 +1.7 +0.6 +0.1
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