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Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_1129 and Psest_1130 are separated by 114 nucleotides
Psest_1130 and Psest_1131 are separated by 123 nucleotides
Psest_1131 and Psest_1132 overlap by 4 nucleotides
Psest_1132 and Psest_1133 are separated by 172 nucleotides
Psest_1129: Psest_1129 - preprotein translocase, SecA subunit, at 1,224,041 to 1,226,797
_1129
Psest_1130: Psest_1130 - glutamate N-acetyltransferase/amino-acid acetyltransferase, at 1,226,912 to 1,228,129
_1130
Psest_1131: Psest_1131 - Glutathione S-transferase, at 1,228,253 to 1,228,885
_1131
Psest_1132: Psest_1132 - mutator mutT protein, at 1,228,882 to 1,229,820
_1132
Psest_1133: Psest_1133 - peroxiredoxin, at 1,229,993 to 1,230,556
_1133
Group
Condition
Psest
_1129
Psest
_1130
Psest
_1131
Psest
_1132
Psest
_1133
stress
Def 2-Furfuraldehyde 0.032 vol%
N.D.
N.D.
+0.5
-3.1
N.D.
carbon source
L-tyrosine (C)
N.D.
N.D.
-0.2
-2.0
N.D.
stress
Def Chlorate 40 mM
N.D.
N.D.
-0.2
-1.3
N.D.
stress
Def Benzethonium chloride 0.008 mM
N.D.
N.D.
+0.1
-1.5
N.D.
stress
Chlorate 75 mM
N.D.
N.D.
-0.0
-1.3
N.D.
carbon source
L-tyrosine (C)
N.D.
N.D.
-0.2
-1.2
N.D.
stress
Def Polymyxin B sulfate 0.00008 mg/ml
N.D.
N.D.
+0.1
-1.3
N.D.
stress
Def Carbenicillin 0.008 mg/ml
N.D.
N.D.
+0.2
-1.3
N.D.
stress
Def Chloride 400 mM
N.D.
N.D.
+0.1
-1.3
N.D.
stress
Def Polymyxin B sulfate 0.0001 mg/ml
N.D.
N.D.
-0.0
-1.1
N.D.
stress
Def Cephalothin 0.04 mg/ml
N.D.
N.D.
+0.1
-1.3
N.D.
stress
syringaldehyde 4 mM
N.D.
N.D.
-0.2
-0.9
N.D.
stress
Nickel (II) chloride 0.9 mM
N.D.
N.D.
-0.3
-0.7
N.D.
anaerobic
Nitrite/ lactate media with Nitrite 20mM
N.D.
N.D.
-0.3
-0.7
N.D.
stress
Def Chlorate 20 mM
N.D.
N.D.
-0.1
-0.9
N.D.
nitrogen source
L-Isoleucine (N)
N.D.
N.D.
-0.1
-0.9
N.D.
stress
Def Vancomycin 0.008 mg/ml
N.D.
N.D.
+0.3
-1.2
N.D.
stress
Thallium(I) acetate 0.1 mg/ml
N.D.
N.D.
+0.1
-1.1
N.D.
stress
Def methylglyoxal 0.01 vol%
N.D.
N.D.
+0.2
-1.1
N.D.
stress
Def Neomycin 0.0002 mg/ml
N.D.
N.D.
+0.1
-0.9
N.D.
carbon source
RCH2 defined media
N.D.
N.D.
+0.2
-0.9
N.D.
radiation
Ionizing radiation, 319.06 Gy,
N.D.
N.D.
+0.2
-0.9
N.D.
stress
Def Thallium(I) acetate 0.125 mg/ml
N.D.
N.D.
+0.2
-0.9
N.D.
stress
Def Neomycin 0.0008 mg/ml
N.D.
N.D.
+0.5
-1.2
N.D.
stress
Def Benzalkonium Chloride 0.002 mg/ml
N.D.
N.D.
+0.4
-1.0
N.D.
RCH2 grown on a colony of 8R2A
N.D.
N.D.
+0.5
-0.7
N.D.
RCH2 grown on a colony of N2F3
N.D.
N.D.
-0.4
+0.6
N.D.
stress
Doxycycline hyclate 0.0002 mg/ml
N.D.
N.D.
-0.4
+0.7
N.D.
stress
Cobalt chloride 0.06 mM
N.D.
N.D.
-0.0
+1.0
N.D.
stress
Carbenicillin 0.0065 mg/ml
N.D.
N.D.
+0.1
+0.8
N.D.
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