Fitness for 5 genes in Pseudomonas stutzeri RCH2

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500 ntPsest_1102 and Psest_1103 are separated by 194 nucleotidesPsest_1103 and Psest_1104 are separated by 25 nucleotidesPsest_1104 and Psest_1105 are separated by 33 nucleotidesPsest_1105 and Psest_1106 are separated by 119 nucleotides Psest_1102: Psest_1102 - Integrase, at 1,198,005 to 1,199,216 _1102 Psest_1103: Psest_1103 - GTP-binding protein YchF, at 1,199,411 to 1,200,511 _1103 Psest_1104: Psest_1104 - peptidyl-tRNA hydrolase, at 1,200,537 to 1,201,121 _1104 Psest_1105: Psest_1105 - ribosomal protein L25, Ctc-form, at 1,201,155 to 1,201,772 _1105 Psest_1106: Psest_1106 - ribose-phosphate pyrophosphokinase, at 1,201,892 to 1,202,881 _1106
Group Condition Psest_1102 Psest_1103 Psest_1104 Psest_1105 Psest_1106
stress Choline chloride 90 mM -0.1 -3.9 N.D. N.D. N.D.
stress Choline chloride 90 mM +0.1 -4.1 N.D. N.D. N.D.
stress Choline Lysine 20 mM +0.2 -4.1 N.D. N.D. N.D.
stress Choline Lysine 20 mM +0.1 -3.8 N.D. N.D. N.D.
RCH2 grown on a colony of N2A2 -0.1 -2.7 N.D. N.D. N.D.
anaerobic Nitrate/ lactate media with Nitrate 250mM -0.1 -2.7 N.D. N.D. N.D.
stress Furfuryl Alcohol 0.05 vol% -0.0 -2.8 N.D. N.D. N.D.
stress Paraquat dichloride 0.015 mg/ml +0.1 -2.5 N.D. N.D. N.D.
stress nitrate 200 mM +0.5 -2.7 N.D. N.D. N.D.
stress Fusidic 0.016 mg/ml -0.0 -2.0 N.D. N.D. N.D.
RCH2 grown on a colony of Serratia -0.1 -1.9 N.D. N.D. N.D.
stress Paraquat dichloride 0.015 mg/ml -0.1 -1.8 N.D. N.D. N.D.
stress Def 2-Furfuraldehyde 0.032 vol% -0.2 -1.8 N.D. N.D. N.D.
temperature LB 30C timecourse1 timepoint 1 +0.1 -2.1 N.D. N.D. N.D.
RCH2 grown on a colony of N2C3 +0.4 -2.2 N.D. N.D. N.D.
stress Carbenicillin 0.008 mg/ml +0.0 -1.9 N.D. N.D. N.D.
nitrogen source Putrescine (N) -0.4 -1.3 N.D. N.D. N.D.
stress Lactate-nitrate; anaerobic; nickel stress sample1 -0.0 -1.7 N.D. N.D. N.D.
stress D-Cycloserine 0.032 mg/ml +0.2 -1.8 N.D. N.D. N.D.
RCH2 grown on a colony of 8R2A -0.2 -1.4 N.D. N.D. N.D.
stress Def Chloride 400 mM +0.3 -1.8 N.D. N.D. N.D.
anaerobic Nitrate/ lactate media with Nitrate 50mM -0.1 -1.4 N.D. N.D. N.D.
lb LB -0.2 -1.3 N.D. N.D. N.D.
RCH2 grown on a colony of Pseudomonas migulae strain N1B4 +0.3 -1.8 N.D. N.D. N.D.
stress Cisplatin 0.003 mg/ml +0.3 -1.6 N.D. N.D. N.D.
nitrogen source L-Glutamic (N) +0.2 -1.3 N.D. N.D. N.D.
stress Neomycin 0.004 mg/ml -0.1 +1.6 N.D. N.D. N.D.
vitamin With vitamins t1 -0.1 +1.5 N.D. N.D. N.D.
carbon source L-tyrosine (C) -0.1 +1.8 N.D. N.D. N.D.
stress Nalidixic 0.00390625 mg/ml +0.4 +1.9 N.D. N.D. N.D.
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