Fitness for 5 genes in Pseudomonas stutzeri RCH2

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500 ntPsest_1091 and Psest_1092 are separated by 69 nucleotidesPsest_1092 and Psest_1093 are separated by 2 nucleotidesPsest_1093 and Psest_1094 are separated by 105 nucleotidesPsest_1094 and Psest_1095 are separated by 1265 nucleotides Psest_1091: Psest_1091 - ABC-type branched-chain amino acid transport systems, periplasmic component, at 1,181,877 to 1,183,094 _1091 Psest_1092: Psest_1092 - Branched-chain amino acid ABC-type transport system, permease components, at 1,183,164 to 1,184,051 _1092 Psest_1093: Psest_1093 - ABC-type branched-chain amino acid transport system, permease component, at 1,184,054 to 1,185,061 _1093 Psest_1094: Psest_1094 - hypothetical protein, at 1,185,167 to 1,185,364 _1094 Psest_1095: Psest_1095 - hypothetical protein, at 1,186,630 to 1,187,493 _1095
Group Condition Psest_1091 Psest_1092 Psest_1093 Psest_1094 Psest_1095
stress Def Carbenicillin 0.008 mg/ml -0.3 -0.1 -0.3 N.D. -0.5
stress Def Carbenicillin 0.02 mg/ml -0.2 -0.5 -0.1 N.D. -0.4
anaerobic Nitrite/ lactate media with Nitrite 20mM -0.1 -0.3 -0.3 N.D. -0.2
stress Furfuryl Alcohol 0.05 vol% -0.1 -0.5 -0.3 N.D. +0.1
stress Lomefloxacin 0.0001 mM -0.2 +0.0 -0.5 N.D. -0.1
stress D-Cycloserine 0.032 mg/ml -0.3 -0.1 +0.2 N.D. -0.5
temperature LB 30C timecourse2 timepoint 1 -0.1 -0.2 +0.1 N.D. -0.3
stress Bacitracin 0.25 mg/ml -0.1 -0.3 -0.3 N.D. +0.2
stress Choline chloride 90 mM -0.3 +0.2 -0.2 N.D. -0.1
stress Benzethonium chloride 0.01 mM -0.3 +0.0 -0.4 N.D. +0.3
stress L-Lysine 200 mM -0.4 -0.3 +0.1 N.D. +0.2
metal limitation Lactate; aerobic; sample2 -0.0 -0.2 +0.2 N.D. -0.4
stress Lactate-nitrate; anaerobic; dichromate stress sample3 +0.1 -0.4 +0.2 N.D. -0.2
stress Polymyxin B sulfate 0.0001 mg/ml -0.1 -0.5 +0.4 N.D. +0.0
RCH2 grown on a colony of Serratia -0.4 -0.2 +0.1 N.D. +0.4
stress Lactate-nitrate; anaerobic; copper stress sample2 -0.1 -0.2 +0.4 N.D. -0.3
stress nitrate 250 mM +0.0 +0.1 +0.2 N.D. -0.5
RCH2 grown on a colony of Serratia +0.7 -0.5 -0.1 N.D. -0.1
stress Lactate-nitrate; anaerobic; nickel stress sample2 +0.2 +0.3 -0.0 N.D. -0.3
stress Benzethonium chloride 0.0125 mM -0.2 +0.4 +0.2 N.D. -0.1
stress Nalidixic 0.00390625 mg/ml +0.2 -0.3 +0.3 N.D. +0.1
stress Def Benzalkonium Chloride 0.002 mg/ml +0.1 +0.2 +0.4 N.D. -0.3
metal limitation Lactate-nitrite with YE; anaerobic; with copper; sample1 +0.2 -0.1 +0.5 N.D. -0.1
stress Def Benzethonium chloride 0.008 mM +0.2 +0.2 +0.4 N.D. -0.2
stress Lactate-nitrate; anaerobic; cadmium stress sample1 +0.2 +0.3 +0.3 N.D. -0.1
RCH2 grown on a colony of N2A2 +0.0 +0.2 +0.2 N.D. +0.3
RCH2 grown on a colony of 8R2A +0.1 +0.5 -0.0 N.D. +0.2
stress Cephalothin 0.04 mg/ml +0.3 +0.3 +0.4 N.D. -0.2
RCH2 grown on a colony of ecoli -0.0 +0.4 +0.2 N.D. +0.3
carbon source L-tyrosine (C) +0.3 +0.3 +0.1 N.D. +0.4
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