Fitness for 5 genes in Pseudomonas stutzeri RCH2

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500 ntPsest_1080 and Psest_1081 overlap by 4 nucleotidesPsest_1081 and Psest_1082 overlap by 1 nucleotidesPsest_1082 and Psest_1083 are separated by 57 nucleotidesPsest_1083 and Psest_1084 are separated by 114 nucleotides Psest_1080: Psest_1080 - Acetyl/propionyl-CoA carboxylase, alpha subunit, at 1,168,381 to 1,170,282 _1080 Psest_1081: Psest_1081 - hypothetical protein, at 1,170,279 to 1,170,887 _1081 Psest_1082: Psest_1082 - Enoyl-CoA hydratase/carnithine racemase, at 1,170,887 to 1,171,684 _1082 Psest_1083: Psest_1083 - 3-methylcrotonyl-CoA carboxylase, beta subunit (EC 6.4.1.4) (from data), at 1,171,742 to 1,173,349 _1083 Psest_1084: Psest_1084 - Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) (from data), at 1,173,464 to 1,174,627 _1084
Group Condition Psest_1080 Psest_1081 Psest_1082 Psest_1083 Psest_1084
carbon source L-Leucine (C) -6.0 -5.7 -7.6 -5.9 -6.3
carbon source L-Leucine (C) -5.9 -6.0 -5.3 -5.6 -6.1
RCH2 grown on a colony of ecoli -4.2 -1.4 -2.8 -3.6 -2.8
nitrogen source L-Valine (N) -3.6 -1.5 -4.2 -3.3 -1.6
RCH2 grown on a colony of ecoli -3.3 -1.0 -3.9 -2.8 -2.3
nitrogen source L-Valine (N) -3.0 -1.0 -4.8 -2.9 -1.6
RCH2 grown on a colony of Serratia -2.3 -1.0 -5.2 -2.6 -1.8
RCH2 grown on a colony of Serratia -2.5 -1.6 -1.0 -2.0 -1.5
nitrogen source L-Isoleucine (N) -1.2 -1.1 -2.9 -0.9 -0.5
RCH2 grown on a colony of Pseudomonas migulae strain N1B4 -1.0 -1.3 -1.7 -0.9 -1.3
stress Def Cephalothin 0.08 mg/ml -2.0 -0.5 -0.9 -2.0 -0.3
stress Def Cephalothin 0.04 mg/ml -2.2 -0.3 -1.2 -2.1 +0.4
RCH2 grown on a colony of N2A2 -1.6 -0.5 -0.3 -1.5 -1.3
RCH2 grown on a colony of N2A2 -1.2 -0.9 -0.9 -1.2 -1.1
carbon source propionate (C) -0.4 -1.3 -2.4 -0.8 -0.1
vitamin No vitamins t2 -0.8 -0.7 -2.0 -0.9 -0.1
carbon source D-Alanine (C) -1.1 +0.2 -2.7 -0.8 +0.0
carbon source L-Isoleucine (C) -1.1 -0.4 -1.3 -0.8 -0.6
carbon source L-Isoleucine (C) -0.9 -0.1 -1.6 -0.9 -0.6
stress Def Chlorate 40 mM -0.2 -0.6 -2.9 -0.2 -0.2
carbon source D-Alanine (C) -1.1 -0.2 -1.7 -0.9 -0.0
stress Def 2-Furfuraldehyde 0.032 vol% -1.1 +0.4 -2.7 -0.0 -0.1
temperature LB 30C timecourse2 timepoint 2 -0.0 -0.9 -2.9 +0.1 +0.2
nitrogen source nitrite (N) +0.0 +0.8 -3.7 -0.1 -0.0
RCH2 grown on a colony of Pseudomonas migulae strain N1B4 -1.2 -0.8 +0.7 -0.9 -0.8
stress Phosphomycin 0.012 mg/ml +0.8 +0.3 +1.8 +0.9 +0.2
stress Def Carbenicillin 0.008 mg/ml +0.1 +1.9 +1.0 +1.1 +0.2
carbon source L-Proline (C) +2.6 +0.6 +1.6 +2.9 +0.1
carbon source L-Proline (C) +3.6 +0.0 +2.6 +3.7 +0.2
carbon source L-Proline (C) +3.5 +0.0 +3.2 +3.5 +0.1
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