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Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psest_1080 and Psest_1081 overlap by 4 nucleotides
Psest_1081 and Psest_1082 overlap by 1 nucleotides
Psest_1082 and Psest_1083 are separated by 57 nucleotides
Psest_1083 and Psest_1084 are separated by 114 nucleotides
Psest_1080: Psest_1080 - Acetyl/propionyl-CoA carboxylase, alpha subunit, at 1,168,381 to 1,170,282
_1080
Psest_1081: Psest_1081 - hypothetical protein, at 1,170,279 to 1,170,887
_1081
Psest_1082: Psest_1082 - Enoyl-CoA hydratase/carnithine racemase, at 1,170,887 to 1,171,684
_1082
Psest_1083: Psest_1083 - 3-methylcrotonyl-CoA carboxylase, beta subunit (EC 6.4.1.4)
(from data)
, at 1,171,742 to 1,173,349
_1083
Psest_1084: Psest_1084 - Isovaleryl-CoA dehydrogenase (EC 1.3.8.4)
(from data)
, at 1,173,464 to 1,174,627
_1084
Group
Condition
Psest
_1080
Psest
_1081
Psest
_1082
Psest
_1083
Psest
_1084
carbon source
L-Leucine (C)
-6.0
-5.7
-7.6
-5.9
-6.3
carbon source
L-Leucine (C)
-5.9
-6.0
-5.3
-5.6
-6.1
RCH2 grown on a colony of ecoli
-4.2
-1.4
-2.8
-3.6
-2.8
nitrogen source
L-Valine (N)
-3.6
-1.5
-4.2
-3.3
-1.6
RCH2 grown on a colony of ecoli
-3.3
-1.0
-3.9
-2.8
-2.3
nitrogen source
L-Valine (N)
-3.0
-1.0
-4.8
-2.9
-1.6
RCH2 grown on a colony of Serratia
-2.3
-1.0
-5.2
-2.6
-1.8
RCH2 grown on a colony of Serratia
-2.5
-1.6
-1.0
-2.0
-1.5
nitrogen source
L-Isoleucine (N)
-1.2
-1.1
-2.9
-0.9
-0.5
RCH2 grown on a colony of Pseudomonas migulae strain N1B4
-1.0
-1.3
-1.7
-0.9
-1.3
stress
Def Cephalothin 0.08 mg/ml
-2.0
-0.5
-0.9
-2.0
-0.3
stress
Def Cephalothin 0.04 mg/ml
-2.2
-0.3
-1.2
-2.1
+0.4
RCH2 grown on a colony of N2A2
-1.6
-0.5
-0.3
-1.5
-1.3
RCH2 grown on a colony of N2A2
-1.2
-0.9
-0.9
-1.2
-1.1
carbon source
propionate (C)
-0.4
-1.3
-2.4
-0.8
-0.1
vitamin
No vitamins t2
-0.8
-0.7
-2.0
-0.9
-0.1
carbon source
D-Alanine (C)
-1.1
+0.2
-2.7
-0.8
+0.0
carbon source
L-Isoleucine (C)
-1.1
-0.4
-1.3
-0.8
-0.6
carbon source
L-Isoleucine (C)
-0.9
-0.1
-1.6
-0.9
-0.6
stress
Def Chlorate 40 mM
-0.2
-0.6
-2.9
-0.2
-0.2
carbon source
D-Alanine (C)
-1.1
-0.2
-1.7
-0.9
-0.0
stress
Def 2-Furfuraldehyde 0.032 vol%
-1.1
+0.4
-2.7
-0.0
-0.1
temperature
LB 30C timecourse2 timepoint 2
-0.0
-0.9
-2.9
+0.1
+0.2
nitrogen source
nitrite (N)
+0.0
+0.8
-3.7
-0.1
-0.0
RCH2 grown on a colony of Pseudomonas migulae strain N1B4
-1.2
-0.8
+0.7
-0.9
-0.8
stress
Phosphomycin 0.012 mg/ml
+0.8
+0.3
+1.8
+0.9
+0.2
stress
Def Carbenicillin 0.008 mg/ml
+0.1
+1.9
+1.0
+1.1
+0.2
carbon source
L-Proline (C)
+2.6
+0.6
+1.6
+2.9
+0.1
carbon source
L-Proline (C)
+3.6
+0.0
+2.6
+3.7
+0.2
carbon source
L-Proline (C)
+3.5
+0.0
+3.2
+3.5
+0.1
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