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Protein
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Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_1069 and Psest_1070 are separated by 140 nucleotides
Psest_1070 and Psest_1071 are separated by 111 nucleotides
Psest_1071 and Psest_1072 are separated by 76 nucleotides
Psest_1072 and Psest_1073 are separated by 16 nucleotides
Psest_1069: Psest_1069 - Protease II, at 1,156,275 to 1,158,104
_1069
Psest_1070: Psest_1070 - Predicted membrane protein, at 1,158,245 to 1,158,643
_1070
Psest_1071: Psest_1071 - Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains, at 1,158,755 to 1,160,254
_1071
Psest_1072: Psest_1072 - TRAP transporter, DctM subunit, at 1,160,331 to 1,161,701
_1072
Psest_1073: Psest_1073 - TRAP-type mannitol/chloroaromatic compound transport system, small permease component, at 1,161,718 to 1,162,320
_1073
Group
Condition
Psest
_1069
Psest
_1070
Psest
_1071
Psest
_1072
Psest
_1073
stress
Def A22 0.015 mg/ml
-0.6
-1.1
-0.7
-0.5
-0.8
carbon source
L-tyrosine (C)
-0.1
-0.2
-3.5
+0.2
+0.1
nitrogen source
L-Isoleucine (N)
+0.4
-2.2
-0.6
-0.8
-0.4
stress
Def Phosphomycin 0.125 mg/ml
-0.4
-1.2
-1.0
-0.6
-0.3
carbon source
L-tyrosine (C)
+0.3
-0.4
-4.0
+0.2
+0.5
nitrogen source
nitrite (N)
-0.1
-0.4
-0.4
-0.6
-0.8
RCH2 grown on a colony of N2F3
-0.5
+0.4
-1.4
-0.0
-0.3
stress
Def Carbenicillin 0.008 mg/ml
+0.1
-0.9
+0.3
-1.0
-0.5
stress
Def Cephalothin 0.08 mg/ml
+0.1
-1.0
-0.8
-0.3
+0.2
carbon source
propionate (C)
-0.3
-0.9
+0.2
-0.1
-0.7
lb
LB
-0.3
+0.4
-0.6
-0.2
-1.0
stress
2-Furfuraldehyde 0.05 vol%
+0.1
-0.2
-0.7
+0.3
-0.9
nitrogen source
Cytosine (N)
-0.2
-1.0
+0.1
-0.4
+0.5
RCH2 grown on a colony of Serratia
-0.0
-1.4
-0.5
+0.3
+0.7
nutrient
Min media with glucose
+0.4
+0.5
-0.3
-0.1
-0.9
stress
Nalidixic 0.00390625 mg/ml
+0.5
+0.8
-0.3
-0.1
-0.4
RCH2 grown on a colony of ecoli
-0.3
+0.3
-0.7
+0.7
+0.5
stress
Lactate-nitrate; anaerobic sample3
+0.6
-0.6
+0.2
+0.3
+0.4
stress
Gentamicin 0.0016 mg/ml
+0.6
+0.8
+0.4
-0.3
-0.1
RCH2 grown on a colony of N2A2
+0.3
+0.2
-0.3
+0.1
+1.5
stress
Polymyxin B sulfate 0.0001 mg/ml
-0.2
+0.7
+0.8
+0.3
+0.4
stress
Def Chloride 400 mM
-0.1
+1.0
+0.6
+0.5
+0.1
stress
Def Polymyxin B sulfate 0.00008 mg/ml
+0.6
+0.8
+0.5
+0.2
+0.1
stress
Benzethonium chloride 0.01 mM
+0.3
+0.8
+0.4
+0.1
+0.6
temperature
LB 30C timecourse2 timepoint 2
+0.4
+0.4
+0.6
+0.5
+0.4
RCH2 grown on a colony of N2C3
-0.3
+1.3
+0.5
+0.3
+0.5
stress
Def Thallium(I) acetate 0.125 mg/ml
+0.4
+0.6
+0.3
+0.8
+0.2
temperature
LB 30C timecourse1 timepoint 3
+0.5
+0.9
+0.4
+0.4
+0.2
stress
Cephalothin 0.04 mg/ml
+0.6
+1.5
+0.2
-0.2
+0.5
stress
Chlorate 75 mM
+0.8
+0.1
+2.2
+0.4
+1.0
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