Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS26060 and EX31_RS17040 overlap by 58 nucleotidesEX31_RS17040 and EX31_RS26065 are separated by 85 nucleotidesEX31_RS26065 and EX31_RS17045 are separated by 108 nucleotidesEX31_RS17045 and EX31_RS17050 overlap by 1 nucleotides EX31_RS26060: EX31_RS26060 - hypothetical protein, at 450 to 575 _RS26060 EX31_RS17040: EX31_RS17040 - transposase, at 518 to 715 _RS17040 EX31_RS26065: EX31_RS26065 - IS630 family transposase, at 801 to 908 _RS26065 EX31_RS17045: EX31_RS17045 - c-type cytochrome, at 1,017 to 1,331 _RS17045 EX31_RS17050: EX31_RS17050 - TlpA family protein disulfide reductase, at 1,331 to 1,804 _RS17050
Group Condition EX31_RS26060 EX31_RS17040 EX31_RS26065 EX31_RS17045 EX31_RS17050
carbon source D-Mannitol (C) N.D. N.D. -1.3 -0.4 +0.1
carbon source D,L-Lactate (C) N.D. N.D. -1.0 -0.1 -0.3
carbon source casaminos (C) N.D. N.D. -0.9 -0.3 +0.0
carbon source D-Glucose (C) N.D. N.D. -1.0 -0.1 +0.1
nitrogen source Ammonium chloride (N); ShewMM media; shaking N.D. N.D. -0.5 -0.1 -0.3
nf_with_fulln NF_with_fullN N.D. N.D. -0.8 +0.1 -0.1
carbon source Sucrose (C) N.D. N.D. -0.8 +0.0 -0.1
carbon source D,L-Lactate (C) N.D. N.D. -0.9 -0.2 +0.3
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum N.D. N.D. -0.5 -0.1 -0.1
carbon source casaminos (C) N.D. N.D. -0.8 +0.1 -0.0
nitrogen source L-Glutamine (N); RCH2 media; shaking N.D. N.D. -0.5 -0.2 +0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum N.D. N.D. -0.8 +0.4 -0.1
nl-ccm; vial NL-CCM; vial N.D. N.D. -0.6 +0.1 -0.0
nl-ccm; ambient oxygen NL-CCM; ambient oxygen N.D. N.D. -0.4 -0.3 +0.2
nl-ccm; ambient oxygen NL-CCM; ambient oxygen N.D. N.D. -0.4 -0.3 +0.1
nl-ccm; vial NL-CCM; vial N.D. N.D. -0.5 +0.2 -0.1
nitrogen source L-Glutamine (N); RCH2 media; shaking N.D. N.D. +0.4 -0.6 -0.2
carbon source D-Xylose (C) N.D. N.D. -0.3 -0.4 +0.3
carbon source NLDM_metabolites (C) N.D. N.D. +0.4 -0.2 -0.3
nitrogen source Ammonium chloride (N); RCH2 media; no shaking N.D. N.D. +0.5 -0.2 -0.4
nitrogen source L-Serine (N); RCH2 media; shaking N.D. N.D. +0.6 -0.2 -0.2
nitrogen source L-Serine (N); ShewMM media; no shaking N.D. N.D. +0.6 -0.2 -0.0
nitrogen source Ammonium chloride (N); ShewMM media; no shaking N.D. N.D. +0.9 -0.2 -0.3
carbon source NLDM_metabolites (C) N.D. N.D. -0.3 +0.4 +0.4
nitrogen source Ammonium chloride (N); RCH2 media; no shaking N.D. N.D. +0.8 +0.0 -0.1
nitrogen source Ammonium chloride (N); RCH2 media; shaking N.D. N.D. +0.9 +0.0 -0.0
nitrogen source Ammonium chloride (N); ShewMM media; shaking N.D. N.D. +0.7 +0.1 +0.1
nitrogen source L-Glutamine (N); ShewMM media; no shaking N.D. N.D. +0.7 +0.0 +0.1
nitrogen source L-Serine (N); RCH2 media; no shaking N.D. N.D. +1.2 -0.5 +0.3
nitrogen source L-Serine (N); ShewMM media; no shaking N.D. N.D. +1.0 -0.3 +0.2
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EX31_RS26060
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EX31_RS17040
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EX31_RS17045
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EX31_RS17050
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