Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS10060 and EX31_RS10065 are separated by 187 nucleotidesEX31_RS10065 and EX31_RS25990 are separated by 376 nucleotidesEX31_RS25990 and EX31_RS10070 are separated by 594 nucleotidesEX31_RS10070 and EX31_RS10075 are separated by 535 nucleotides EX31_RS10060: EX31_RS10060 - oligopeptide ABC transporter permease OppB, at 218,082 to 219,002 _RS10060 EX31_RS10065: EX31_RS10065 - oligopeptide ABC transporter substrate-binding protein OppA, at 219,190 to 220,830 _RS10065 EX31_RS25990: EX31_RS25990 - hypothetical protein, at 221,207 to 221,410 _RS25990 EX31_RS10070: EX31_RS10070 - YchE family NAAT transporter, at 222,005 to 222,649 _RS10070 EX31_RS10075: EX31_RS10075 - bifunctional acetaldehyde-CoA/alcohol dehydrogenase, at 223,185 to 225,854 _RS10075
Group Condition EX31_RS10060 EX31_RS10065 EX31_RS25990 EX31_RS10070 EX31_RS10075
nl-ccm; low oxygen NL-CCM; low oxygen -0.2 -0.1 -0.7 +0.1 -0.9
nl-ccm; high oxygen NL-CCM; high oxygen -0.2 -0.1 -0.6 -0.2 -0.8
nl-ccm; low oxygen NL-CCM; low oxygen +0.0 -0.3 -0.6 +0.0 -0.8
nl-ccm; low oxygen NL-CCM; low oxygen -0.2 -0.0 -0.2 -0.0 -1.0
nitrogen source L-Glutamine (N); ShewMM media; no shaking +0.1 +0.4 -0.3 -0.2 -1.4
nitrogen source L-Serine (N); ShewMM media; no shaking -0.2 +0.2 -0.3 -0.4 -0.7
nl-ccm; low oxygen NL-CCM; low oxygen +0.0 +0.0 -0.4 +0.1 -1.1
nitrogen source L-Glutamine (N); RCH2 media; no shaking -0.1 -0.2 -0.1 -0.2 -0.8
nl-ccm; low oxygen NL-CCM; low oxygen -0.0 -0.0 -0.3 -0.1 -0.9
nl-ccm; high oxygen NL-CCM; high oxygen -0.2 -0.0 -0.4 +0.0 -0.8
nl-ccm; high oxygen NL-CCM; high oxygen -0.0 -0.2 -0.3 +0.0 -0.8
mgl MGL -0.3 -0.1 -0.4 -0.3 +0.0
nl-ccm; low oxygen NL-CCM; low oxygen -0.1 +0.1 -0.3 -0.0 -0.7
nitrogen source Ammonium chloride (N); ShewMM media; no shaking -0.2 +0.1 +0.2 +0.0 -1.2
nl-ccm; high oxygen NL-CCM; high oxygen -0.3 -0.0 +0.1 +0.1 -0.7
nitrogen source Ammonium chloride (N); ShewMM media; no shaking +0.2 +0.2 -0.2 -0.0 -0.9
nitrogen source L-Serine (N); RCH2 media; no shaking -0.1 +0.1 +0.3 -0.1 -0.9
carbon source Sucrose (C) +0.0 -0.2 -0.6 +0.2 -0.1
nitrogen source L-Glutamine (N); ShewMM media; no shaking -0.1 +0.1 +0.5 -0.4 -0.7
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum +0.2 +0.1 -1.2 +0.2 +0.2
nl-ccm; high oxygen NL-CCM; high oxygen -0.2 +0.1 +0.3 -0.0 -0.7
nitrogen source Ammonium chloride (N); RCH2 media; no shaking +0.1 +0.2 +0.3 -0.1 -0.9
nitrogen source L-Serine (N); RCH2 media; no shaking -0.1 +0.1 +0.4 -0.1 -0.5
nitrogen source L-Glutamine (N); RCH2 media; no shaking -0.1 +0.2 +0.3 +0.2 -0.7
nitrogen source L-Serine (N); RCH2 media; shaking -0.0 +0.4 -0.5 -0.1 +0.1
nitrogen source Ammonium chloride (N); RCH2 media; no shaking +0.0 +0.0 +0.5 +0.1 -0.9
nitrogen source L-Serine (N); RCH2 media; no shaking -0.2 +0.3 +0.6 -0.0 -0.7
mgl MGL +0.1 +0.0 +0.3 -0.6 +0.1
nitrogen source L-Serine (N); ShewMM media; no shaking -0.0 +0.2 +0.6 +0.1 -0.6
carbon source D,L-Lactate (C) -0.2 +0.1 +0.4 +0.4 -0.1
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EX31_RS10060
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EX31_RS10065
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