Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS00375 and EX31_RS00380 are separated by 24 nucleotidesEX31_RS00380 and EX31_RS25885 are separated by 44 nucleotidesEX31_RS25885 and EX31_RS00390 are separated by 418 nucleotidesEX31_RS00390 and EX31_RS00395 are separated by 16 nucleotides EX31_RS00375: EX31_RS00375 - ABC transporter ATP-binding protein, at 79,131 to 79,997 _RS00375 EX31_RS00380: EX31_RS00380 - ABC transporter ATP-binding protein, at 80,022 to 80,792 _RS00380 EX31_RS25885: EX31_RS25885 - type VI secretion system baseplate subunit TssG, at 80,837 to 80,971 _RS25885 EX31_RS00390: EX31_RS00390 - GNAT family N-acetyltransferase, at 81,390 to 82,371 _RS00390 EX31_RS00395: EX31_RS00395 - ABC transporter permease subunit, at 82,388 to 84,175 _RS00395
Group Condition EX31_RS00375 EX31_RS00380 EX31_RS25885 EX31_RS00390 EX31_RS00395
nitrogen source Ammonium chloride (N); RCH2 media; shaking -0.2 -0.1 -2.0 -0.2 +0.0
nitrogen source Ammonium chloride (N); ShewMM media; shaking -0.0 -0.5 -1.0 -0.2 -0.4
carbon source NLDM_metabolites (C) +0.1 -0.8 -1.0 +0.1 -0.4
carbon source Sucrose (C) -0.4 -0.8 -0.7 +0.2 -0.1
nitrogen source Ammonium chloride (N); RCH2 media; shaking -0.0 -0.5 -0.8 -0.2 -0.1
nitrogen source L-Serine (N); RCH2 media; no shaking -0.2 -0.5 -0.4 -0.3 -0.3
nitrogen source Ammonium chloride (N); ShewMM media; no shaking -0.1 -0.7 -0.7 -0.0 -0.1
nitrogen source L-Glutamine (N); RCH2 media; shaking -0.1 -0.3 -0.8 -0.2 -0.3
carbon source casaminos (C) -0.3 -0.5 -0.7 -0.0 +0.1
mgl MGL -0.6 -0.7 +0.2 +0.0 -0.4
nitrogen source Ammonium chloride (N); RCH2 media; no shaking -0.2 -0.9 +0.2 -0.2 -0.2
carbon source D,L-Lactate (C) -0.0 -1.9 +0.1 +0.3 +0.2
nitrogen source L-Serine (N); RCH2 media; no shaking -0.1 -0.0 -1.1 -0.3 +0.3
carbon source Sucrose (C) +0.2 -0.8 -0.5 +0.0 -0.1
nl-ccm; high oxygen NL-CCM; high oxygen -0.2 -1.1 -0.0 +0.2 +0.2
nitrogen source L-Glutamine (N); ShewMM media; shaking -0.2 +0.3 -1.2 -0.0 +0.3
nf_with_fulln NF_with_fullN -0.2 -0.8 +0.3 +0.2 -0.1
nitrogen source L-Serine (N); RCH2 media; shaking +0.1 +0.4 -1.1 -0.1 +0.1
nln NLN -0.1 -0.9 +0.2 +0.3 +0.0
nl-ccm; ambient oxygen NL-CCM; ambient oxygen -0.1 -1.0 +0.4 +0.2 -0.0
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum -0.1 -0.7 +0.4 -0.3 +0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum +0.0 -0.9 +0.5 -0.2 +0.1
carbon source casaminos (C) -0.0 -0.6 -0.3 +0.2 +0.3
nf_with10percent_fulln NF_with10percent_fullN -0.2 -0.7 +0.2 +0.5 -0.1
nf_with10percent_fulln NF_with10percent_fullN -0.2 -0.8 +0.5 +0.4 -0.0
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +0.0 -0.7 +0.4 +0.2 +0.2
nf_with10percent_fulln NF_with10percent_fullN -0.2 -0.5 +0.6 +0.3 +0.1
nf_with10percent_fulln NF_with10percent_fullN -0.3 -0.4 +0.5 +0.4 +0.2
nf_with10percent_fulln NF_with10percent_fullN -0.2 -0.3 +0.5 +0.3 +0.2
nl-ccm; low oxygen NL-CCM; low oxygen -0.0 -0.4 +0.8 +0.2 +0.2
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EX31_RS00375
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EX31_RS00380
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EX31_RS00390
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EX31_RS00395
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