Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS21705 and EX31_RS21715 are separated by 353 nucleotidesEX31_RS21715 and EX31_RS25615 are separated by 275 nucleotidesEX31_RS25615 and EX31_RS21720 are separated by 417 nucleotidesEX31_RS21720 and EX31_RS21725 overlap by 4 nucleotides EX31_RS21705: EX31_RS21705 - ABC transporter substrate-binding protein, at 85,209 to 85,988 _RS21705 EX31_RS21715: EX31_RS21715 - glycoside hydrolase, at 86,342 to 89,224 _RS21715 EX31_RS25615: EX31_RS25615 - AlpA family phage regulatory protein, at 89,500 to 89,638 _RS25615 EX31_RS21720: EX31_RS21720 - DUF2892 domain-containing protein, at 90,056 to 90,586 _RS21720 EX31_RS21725: EX31_RS21725 - helix-turn-helix transcriptional regulator, at 90,583 to 90,900 _RS21725
Group Condition EX31_RS21705 EX31_RS21715 EX31_RS25615 EX31_RS21720 EX31_RS21725
nl-ccm; high oxygen NL-CCM; high oxygen -0.2 -0.0 N.D. -0.5 +0.2
nf_with10percent_fulln NF_with10percent_fullN -0.1 -0.1 N.D. -0.3 +0.4
nln NLN -0.1 +0.0 N.D. -0.3 +0.3
nitrogen source L-Serine (N); ShewMM media; no shaking -0.2 +0.3 N.D. -0.2 -0.1
carbon source Sucrose (C) +0.3 +0.0 N.D. -0.3 -0.2
nl-ccm; high oxygen NL-CCM; high oxygen -0.2 -0.1 N.D. -0.2 +0.5
nf_with10percent_fulln NF_with10percent_fullN -0.1 -0.1 N.D. -0.3 +0.4
nl-ccm; high oxygen NL-CCM; high oxygen -0.1 -0.1 N.D. -0.3 +0.4
carbon source D,L-Lactate (C) +0.3 -0.0 N.D. -0.1 -0.3
nl-ccm; ambient oxygen NL-CCM; ambient oxygen -0.4 -0.1 N.D. -0.3 +0.8
nf_with10percent_fulln NF_with10percent_fullN -0.1 -0.1 N.D. -0.3 +0.5
nf_with10percent_fulln NF_with10percent_fullN -0.2 -0.1 N.D. +0.0 +0.4
nl-ccm; high oxygen NL-CCM; high oxygen +0.0 -0.1 N.D. -0.3 +0.5
nl-ccm; high oxygen NL-CCM; high oxygen +0.1 -0.1 N.D. -0.1 +0.4
nf_with10percent_fulln NF_with10percent_fullN -0.2 -0.1 N.D. -0.1 +0.6
carbon source NLDM_metabolites (C) +0.2 -0.0 N.D. +0.4 -0.3
nl-ccm; ambient oxygen NL-CCM; ambient oxygen -0.1 -0.0 N.D. -0.5 +1.0
mgl MGL +0.4 +0.0 N.D. -0.1 +0.2
nl-ccm; ambient oxygen NL-CCM; ambient oxygen -0.1 -0.1 N.D. -0.2 +0.9
carbon source D-Mannitol (C) +0.6 +0.0 N.D. -0.2 +0.0
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +0.1 -0.1 N.D. -0.3 +0.8
carbon source D-Mannitol (C) +0.4 +0.0 N.D. +0.2 -0.1
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +0.2 -0.2 N.D. -0.2 +0.8
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +0.1 -0.1 N.D. -0.2 +0.8
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum +0.3 -0.1 N.D. +0.3 +0.2
carbon source Sucrose (C) +0.5 +0.0 N.D. +0.3 -0.1
carbon source D-Glucose (C) +0.4 +0.1 N.D. +0.2 -0.1
nf_with_fulln NF_with_fullN +0.3 +0.0 N.D. +0.2 +0.4
mgl MGL +0.3 +0.1 N.D. +0.1 +0.3
carbon source casaminos (C) +0.4 +0.0 N.D. +0.2 +0.3
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