Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS04860 and EX31_RS04865 overlap by 21 nucleotidesEX31_RS04865 and EX31_RS25145 overlap by 17 nucleotidesEX31_RS25145 and EX31_RS04870 are separated by 100 nucleotidesEX31_RS04870 and EX31_RS04875 are separated by 27 nucleotides EX31_RS04860: EX31_RS04860 - LysR family transcriptional regulator, at 99,311 to 100,231 _RS04860 EX31_RS04865: EX31_RS04865 - DUF2442 domain-containing protein, at 100,211 to 100,477 _RS04865 EX31_RS25145: EX31_RS25145 - DUF4160 domain-containing protein, at 100,461 to 100,700 _RS25145 EX31_RS04870: EX31_RS04870 - malonate decarboxylase subunit epsilon, at 100,801 to 101,736 _RS04870 EX31_RS04875: EX31_RS04875 - malonate decarboxylase holo-ACP synthase, at 101,764 to 102,390 _RS04875
Group Condition EX31_RS04860 EX31_RS04865 EX31_RS25145 EX31_RS04870 EX31_RS04875
nf_with_fulln NF_with_fullN -0.2 -0.1 -0.3 +0.1 -0.3
nf_with_fulln NF_with_fullN -0.1 -0.1 -0.4 +0.1 -0.1
nf_with_fulln NF_with_fullN -0.2 -0.1 -0.2 +0.1 -0.2
nl-ccm; ambient oxygen NL-CCM; ambient oxygen -0.3 -0.0 -0.2 +0.1 -0.1
carbon source D-Glucose (C) +0.0 -0.2 +0.0 -0.3 +0.1
nf_with_fulln NF_with_fullN -0.2 -0.0 -0.3 +0.2 -0.1
nl-ccm; ambient oxygen NL-CCM; ambient oxygen -0.1 -0.2 -0.2 +0.0 +0.2
nf_with10percent_fulln NF_with10percent_fullN -0.1 -0.1 -0.2 +0.1 -0.1
nln NLN -0.1 -0.2 -0.2 +0.1 +0.1
nf_with10percent_fulln NF_with10percent_fullN -0.2 -0.2 -0.2 +0.1 +0.2
carbon source D,L-Lactate (C) +0.1 +0.0 +0.1 +0.0 -0.4
nl-ccm; ambient oxygen NL-CCM; ambient oxygen -0.2 -0.1 -0.1 +0.0 +0.2
nitrogen source L-Glutamine (N); RCH2 media; no shaking -0.0 +0.2 -0.0 +0.0 -0.3
nl-ccm; ambient oxygen NL-CCM; ambient oxygen -0.0 -0.3 -0.1 +0.1 +0.1
carbon source D-Mannitol (C) -0.1 +0.1 +0.1 -0.1 -0.2
nl-ccm; ambient oxygen NL-CCM; ambient oxygen -0.2 -0.1 -0.1 +0.1 +0.2
nf_with10percent_fulln NF_with10percent_fullN +0.0 -0.2 -0.2 +0.1 +0.1
nitrogen source Ammonium chloride (N); ShewMM media; shaking -0.1 +0.2 -0.1 +0.1 -0.1
carbon source Sucrose (C) +0.2 -0.1 -0.2 -0.0 +0.2
carbon source casaminos (C) -0.1 -0.3 +0.1 +0.0 +0.4
nl-ccm; vial NL-CCM; vial +0.2 +0.1 -0.1 +0.1 -0.2
carbon source NLDM_metabolites (C) +0.2 +0.3 -0.2 -0.0 -0.1
nitrogen source L-Serine (N); ShewMM media; no shaking +0.0 +0.3 +0.1 -0.0 -0.2
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum -0.0 -0.1 -0.2 -0.0 +0.5
nitrogen source Ammonium chloride (N); ShewMM media; no shaking +0.1 +0.2 +0.2 -0.1 +0.0
nitrogen source L-Serine (N); ShewMM media; shaking +0.1 +0.2 +0.2 +0.1 -0.1
nitrogen source L-Serine (N); ShewMM media; shaking -0.1 +0.1 +0.2 +0.1 +0.1
carbon source D-Xylose (C) +0.1 -0.1 +0.1 +0.1 +0.3
nitrogen source Ammonium chloride (N); RCH2 media; no shaking +0.2 +0.3 +0.2 +0.0 -0.2
carbon source Sucrose (C) -0.0 +0.1 +0.1 -0.0 +0.4
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