Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS24780 and EX31_RS25690 are separated by 355 nucleotidesEX31_RS25690 and EX31_RS24790 are separated by 665 nucleotidesEX31_RS24790 and EX31_RS24795 are separated by 200 nucleotidesEX31_RS24795 and EX31_RS24800 are separated by 58 nucleotides EX31_RS24780: EX31_RS24780 - YebY family protein, at 726,280 to 726,615 _RS24780 EX31_RS25690: EX31_RS25690 - tyrosine-type recombinase/integrase, at 726,971 to 727,123 _RS25690 EX31_RS24790: EX31_RS24790 - cation transporter, at 727,789 to 728,700 _RS24790 EX31_RS24795: EX31_RS24795 - hypothetical protein, at 728,901 to 729,689 _RS24795 EX31_RS24800: EX31_RS24800 - MBL fold metallo-hydrolase, at 729,748 to 731,727 _RS24800
Group Condition EX31_RS24780 EX31_RS25690 EX31_RS24790 EX31_RS24795 EX31_RS24800
carbon source NLDM_metabolites (C) +0.1 -4.1 -0.1 +0.1 +0.2
carbon source Sucrose (C) +0.2 -1.6 -0.0 -0.5 +0.1
carbon source NLDM_metabolites (C) -0.6 -1.2 -0.0 -0.0 +0.1
nl-ccm NL-CCM -0.5 -0.9 -0.3 +0.0 +0.0
nitrogen source L-Serine (N); ShewMM media; no shaking -0.3 -0.8 -0.3 -0.0 -0.2
nl-ccm; low oxygen NL-CCM; low oxygen -0.4 -1.1 -0.0 +0.1 -0.1
nln NLN -0.1 -1.2 -0.3 +0.2 -0.1
nitrogen source Ammonium chloride (N); ShewMM media; shaking -0.5 -1.0 -0.2 +0.2 +0.1
carbon source D-Glucose (C) +0.2 -1.7 +0.0 -0.1 +0.2
nf_with_fulln NF_with_fullN +0.1 -1.4 +0.1 -0.0 -0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum -0.2 -0.8 -0.4 +0.1 +0.0
nitrogen source Ammonium chloride (N); RCH2 media; no shaking -0.1 -0.9 +0.0 -0.3 +0.0
nitrogen source L-Serine (N); ShewMM media; no shaking +0.3 -1.1 -0.3 -0.0 -0.1
nitrogen source L-Serine (N); RCH2 media; shaking -0.3 -1.1 +0.1 -0.1 +0.2
nitrogen source L-Serine (N); RCH2 media; no shaking +0.2 -1.2 -0.1 -0.2 +0.2
nf_with_fulln NF_with_fullN +0.3 -1.2 -0.2 +0.1 -0.1
nln NLN -0.1 -0.4 -0.8 +0.2 +0.1
nl-ccm_agar NL-CCM_agar -0.6 -0.3 -0.4 +0.2 -0.0
nitrogen source L-Glutamine (N); ShewMM media; no shaking -0.3 -0.7 +0.1 -0.3 +0.1
nl-ccm_agar NL-CCM_agar +0.1 -0.5 -0.5 +0.2 +0.1
carbon source D,L-Lactate (C) -0.3 -0.8 +0.5 +0.1 -0.1
carbon source D-Xylose (C) +0.2 -0.7 +0.1 -0.2 +0.2
nitrogen source Ammonium chloride (N); ShewMM media; no shaking -0.1 +0.5 -0.6 -0.3 +0.1
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum -0.2 +0.7 -0.7 +0.2 -0.0
nitrogen source L-Serine (N); ShewMM media; shaking -0.4 +0.7 -0.1 +0.0 +0.1
nl-ccm_agar NL-CCM_agar +0.0 +0.7 -0.6 +0.1 +0.0
nitrogen source Ammonium chloride (N); ShewMM media; no shaking -0.2 +1.0 -0.3 -0.0 +0.2
nitrogen source L-Serine (N); RCH2 media; no shaking +0.3 +0.8 -0.2 -0.1 -0.1
nitrogen source L-Glutamine (N); RCH2 media; shaking +0.2 +0.8 +0.1 -0.3 +0.1
carbon source casaminos (C) +0.5 +0.8 -0.1 -0.1 +0.3
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