Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS24440 and EX31_RS24445 are separated by 101 nucleotidesEX31_RS24445 and EX31_RS24450 are separated by 226 nucleotidesEX31_RS24450 and EX31_RS24455 are separated by 17 nucleotidesEX31_RS24455 and EX31_RS24460 overlap by 11 nucleotides EX31_RS24440: EX31_RS24440 - acyl carrier protein, at 656,153 to 656,389 _RS24440 EX31_RS24445: EX31_RS24445 - beta-ketoacyl-ACP synthase II, at 656,491 to 657,732 _RS24445 EX31_RS24450: EX31_RS24450 - aminodeoxychorismate lyase, at 657,959 to 658,756 _RS24450 EX31_RS24455: EX31_RS24455 - endolytic transglycosylase MltG, at 658,774 to 659,799 _RS24455 EX31_RS24460: EX31_RS24460 - dTMP kinase, at 659,789 to 660,439 _RS24460
Group Condition EX31_RS24440 EX31_RS24445 EX31_RS24450 EX31_RS24455 EX31_RS24460
carbon source NLDM_metabolites (C) N.D. +0.1 -2.8 +0.0 N.D.
nf_with_fulln NF_with_fullN N.D. -0.0 -2.8 +0.2 N.D.
nf_with_fulln NF_with_fullN N.D. -0.2 -2.3 +0.3 N.D.
nf_with_fulln NF_with_fullN N.D. -0.2 -1.6 +0.1 N.D.
nf_with_fulln NF_with_fullN N.D. -0.1 -1.7 +0.2 N.D.
nf_with_fulln NF_with_fullN N.D. -0.2 -1.6 +0.3 N.D.
nitrogen source Ammonium chloride (N); ShewMM media; shaking N.D. +0.0 -1.1 -0.3 N.D.
nf_with_fulln NF_with_fullN N.D. -0.2 -1.4 +0.2 N.D.
nitrogen source L-Glutamine (N); ShewMM media; shaking N.D. +0.1 -1.1 -0.1 N.D.
nitrogen source Ammonium chloride (N); ShewMM media; no shaking N.D. -0.2 -0.7 -0.2 N.D.
nitrogen source L-Glutamine (N); RCH2 media; no shaking N.D. -0.0 -0.9 -0.1 N.D.
nf_with10percent_fulln NF_with10percent_fullN N.D. +0.0 -1.1 +0.2 N.D.
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum N.D. +0.0 -0.9 +0.1 N.D.
nln NLN N.D. +0.0 -0.9 +0.1 N.D.
nitrogen source L-Glutamine (N); ShewMM media; shaking N.D. +0.1 -0.7 -0.1 N.D.
carbon source casaminos (C) N.D. +0.2 -0.8 -0.0 N.D.
nitrogen source L-Glutamine (N); RCH2 media; no shaking N.D. +0.1 -0.7 +0.1 N.D.
nl-ccm; ambient oxygen NL-CCM; ambient oxygen N.D. +0.1 -0.9 +0.2 N.D.
nf_with10percent_fulln NF_with10percent_fullN N.D. +0.1 -0.8 +0.3 N.D.
nf_with10percent_fulln NF_with10percent_fullN N.D. +0.1 -0.9 +0.4 N.D.
nl-ccm_agar NL-CCM_agar N.D. +0.2 -0.8 +0.2 N.D.
nln NLN N.D. +0.2 -0.8 +0.2 N.D.
nl-ccm; vial NL-CCM; vial N.D. +0.1 -0.7 +0.2 N.D.
nf_with10percent_fulln NF_with10percent_fullN N.D. +0.0 -0.7 +0.4 N.D.
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum N.D. +0.2 -0.7 +0.2 N.D.
nf_with10percent_fulln NF_with10percent_fullN N.D. +0.2 -0.6 +0.2 N.D.
nl-ccm; ambient oxygen NL-CCM; ambient oxygen N.D. +0.2 -0.5 +0.3 N.D.
nitrogen source L-Glutamine (N); ShewMM media; no shaking N.D. +0.0 +0.8 -0.1 N.D.
nitrogen source L-Serine (N); RCH2 media; no shaking N.D. +0.2 +0.9 -0.2 N.D.
mgl MGL N.D. +0.0 +0.8 +0.3 N.D.
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EX31_RS24440
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EX31_RS24445
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EX31_RS24460
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