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Protein
Homologs
Fitness for 5 genes in
Rahnella sp. WP5
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
EX31_RS24185 and EX31_RS24190 are separated by 4 nucleotides
EX31_RS24190 and EX31_RS24195 are separated by 177 nucleotides
EX31_RS24195 and EX31_RS24200 are separated by 124 nucleotides
EX31_RS24200 and EX31_RS24205 are separated by 51 nucleotides
EX31_RS24185: EX31_RS24185 - DNA-binding transcriptional repressor DeoR, at 606,473 to 607,237
_RS24185
EX31_RS24190: EX31_RS24190 - DNA gyrase inhibitor, at 607,242 to 607,718
_RS24190
EX31_RS24195: EX31_RS24195 - membrane protein, at 607,896 to 608,405
_RS24195
EX31_RS24200: EX31_RS24200 - hypothetical protein, at 608,530 to 608,805
_RS24200
EX31_RS24205: EX31_RS24205 - hypothetical protein, at 608,857 to 609,117
_RS24205
Group
Condition
EX31
_RS24185
EX31
_RS24190
EX31
_RS24195
EX31
_RS24200
EX31
_RS24205
nf_with_fulln
NF_with_fullN
-0.4
-0.0
-0.1
-0.6
-0.6
nln
NLN
-0.6
+0.2
-0.1
-0.3
-0.9
nitrogen source
L-Glutamine (N); RCH2 media; no shaking
-0.3
+0.2
-0.1
-0.6
-0.6
nf_with_fulln
NF_with_fullN
-0.6
+0.2
-0.1
-0.5
-0.4
nln
NLN
-0.5
+0.2
-0.0
-0.3
-0.5
nf_with_fulln
NF_with_fullN
-0.5
+0.2
-0.1
-0.4
-0.1
nf_with10percent_fulln
NF_with10percent_fullN
-0.5
-0.4
-0.3
+0.1
+0.3
mgl
MGL
-0.5
+0.2
-0.0
-0.3
-0.3
nitrogen source
Ammonium chloride (N); ShewMM media; no shaking
-0.6
+0.2
+0.0
-0.1
-0.3
mgl
MGL
-0.9
+0.2
-0.1
-0.0
+0.0
nf_with_fulln
NF_with_fullN
-0.6
+0.2
+0.1
-0.5
+0.2
nf_with_fulln
NF_with_fullN
-0.8
+0.4
+0.1
-0.2
-0.1
nitrogen source
L-Glutamine (N); RCH2 media; no shaking
+0.0
+0.3
+0.0
-0.5
-0.5
nitrogen source
L-Serine (N); ShewMM media; shaking
+0.1
+0.3
-0.2
-0.2
-0.6
nitrogen source
L-Serine (N); RCH2 media; no shaking
-0.0
+0.5
+0.0
+0.0
-1.0
carbon source
D,L-Lactate (C)
+0.3
+0.3
+0.0
-0.6
-0.1
nitrogen source
L-Serine (N); RCH2 media; no shaking
-0.4
+0.5
+0.1
+0.4
-0.7
mixed community
NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
-0.4
+0.5
-0.1
-0.1
+0.3
carbon source
NLDM_metabolites (C)
+0.4
-0.6
+0.3
-0.3
+0.4
nitrogen source
L-Serine (N); RCH2 media; shaking
-0.5
+0.5
-0.1
+0.3
+0.1
nl-ccm_agar
NL-CCM_agar
-0.3
-0.1
-0.1
+0.3
+0.6
mixed community
NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
-0.3
+0.2
+0.1
-0.1
+0.6
nitrogen source
L-Serine (N); RCH2 media; no shaking
+0.2
+0.6
-0.0
+0.3
-0.5
nitrogen source
L-Glutamine (N); RCH2 media; no shaking
-0.2
+0.5
-0.2
+0.4
-0.0
nl-ccm; high oxygen
NL-CCM; high oxygen
+0.1
-0.2
-0.1
+0.3
+0.7
carbon source
casaminos (C)
-0.1
-0.1
+0.3
+0.4
+0.3
nitrogen source
L-Serine (N); ShewMM media; no shaking
+0.2
+0.8
-0.2
+0.4
-0.3
mgl
MGL
-0.5
+0.7
+0.0
+0.2
+0.7
carbon source
D,L-Lactate (C)
+0.4
-0.0
+0.3
+0.4
+0.4
carbon source
NLDM_metabolites (C)
+0.1
+1.0
+0.4
+0.1
+0.3
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